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    Zswim4 zinc finger, SWIM-type containing 4 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 304655, updated on 9-Dec-2024

    Summary

    Official Symbol
    Zswim4provided by RGD
    Official Full Name
    zinc finger, SWIM-type containing 4provided by RGD
    Primary source
    RGD:1308020
    See related
    EnsemblRapid:ENSRNOG00000007582 AllianceGenome:RGD:1308020
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be part of Cul2-RING ubiquitin ligase complex. Orthologous to human ZSWIM4 (zinc finger SWIM-type containing 4). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Adrenal (RPKM 63.4), Lung (RPKM 44.7) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Zswim4 in Genome Data Viewer
    Location:
    19q11
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 19 NC_086037.1 (40832608..40857742)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 19 NC_051354.1 (23927845..23952970)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (25320683..25345818, complement)

    Chromosome 19 - NC_086037.1Genomic Context describing neighboring genes Neighboring gene YJU2 splicing factor homolog B Neighboring gene methylthioribose-1-phosphate isomerase 1 Neighboring gene similar to human chromosome 19 open reading frame 53 Neighboring gene microRNA 24-2 Neighboring gene microRNA 27a

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    zinc finger SWIM domain-containing protein 4
    Names
    zinc finger, SWIM domain containing 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001430442.1NP_001417371.1  zinc finger SWIM domain-containing protein 4

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000019
      UniProtKB/TrEMBL
      A6IYA3

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086037.1 Reference GRCr8

      Range
      40832608..40857742
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063277966.1XP_063134036.1  zinc finger SWIM domain-containing protein 4 isoform X1

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001107163.1: Suppressed sequence

      Description
      NM_001107163.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.