U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Obp50a Odorant-binding protein 50a [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 246432, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Obp50aprovided by FlyBase
    Official Full Name
    Odorant-binding protein 50aprovided by FlyBase
    Primary source
    FLYBASE:FBgn0050067
    Locus tag
    Dmel_CG30067
    See related
    AllianceGenome:FB:FBgn0050067
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    anon-AE003814.2; CG30067; DmelObp50a; Dmel\CG30067
    Summary
    Predicted to enable odorant binding activity. Predicted to be involved in sensory perception of chemical stimulus. Predicted to be located in extracellular region. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Obp50a in Genome Data Viewer
    Location:
    50F6-50F6; 2-70 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (14370331..14371116, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (10257836..10258621, complement)

    Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Odorant-binding protein 50c Neighboring gene Odorant-binding protein 50b Neighboring gene Odorant-binding protein 50d

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Functional Diversification, Redundancy, and Epistasis among Paralogs of the Drosophila melanogaster Obp50a-d Gene Cluster. Johnstun JA, et al. Mol Biol Evol, 2021 May 4. PMID 33560417, Free PMC Article
    2. "Plus-C" odorant-binding protein genes in two Drosophila species and the malaria mosquito Anopheles gambiae. Zhou JJ, et al. Gene, 2004 Feb 18. PMID 14960367
    3. Evolution of gene expression in the Drosophila olfactory system. Kopp A, et al. Mol Biol Evol, 2008 Jun. PMID 18296696, Free PMC Article
    4. Expression Divergence of Chemosensory Genes between Drosophila sechellia and Its Sibling Species and Its Implications for Host Shift. Shiao MS, et al. Genome Biol Evol, 2015 Oct 1. PMID 26430061, Free PMC Article
    5. Uncovering the functional constraints underlying the genomic organization of the odorant-binding protein genes. Librado P, et al. Genome Biol Evol, 2013. PMID 24148943, Free PMC Article

    See all (28) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables odorant binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in sensory perception of chemical stimulus ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    Odorant-binding protein 50a
    Names
    CG30067-PA
    CG30067-PB
    Obp50a-PA
    Obp50a-PB

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.4 Reference assembly

      Range
      14370331..14371116 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_166050.2 → NP_725385.1  Odorant-binding protein 50a, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_725385.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A1Z9Q1, C4XVF0
      Related
      FBpp0086685

    2. NM_206110.2 → NP_995832.1  Odorant-binding protein 50a, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_995832.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A1Z9Q2, C4XVF0
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A1Z9Q1 A1Z9Q1
    A1Z9Q2 A1Z9Q2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools