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    LINC01395 long intergenic non-protein coding RNA 1395 [ Homo sapiens (human) ]

    Gene ID: 101929557, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC01395provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1395provided by HGNC
    Primary source
    HGNC:HGNC:50674
    See related
    Ensembl:ENSG00000281097 AllianceGenome:HGNC:50674
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC01395 in Genome Data Viewer
    Location:
    11q24.3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (129612116..129617269, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (129647842..129652995, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (129482011..129487164, complement)

    Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene ReSE screen-validated silencer GRCh37_chr11:129269826-129270022 Neighboring gene BARX homeobox 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5747 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:129310555-129311079 Neighboring gene NANOG hESC enhancer GRCh37_chr11:129323212-129323713 Neighboring gene ribosomal protein S27 pseudogene 20 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:129458354-129458956 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr11:129509075-129510274 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:129593081-129593582 Neighboring gene uncharacterized LOC124902792 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:129619939-129620440 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:129620441-129620940 Neighboring gene uncharacterized LOC124902793 Neighboring gene Sharpr-MPRA regulatory region 8939 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:129673393-129673893

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Other Names

    • TCONS_00019178

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_120582.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AP003500, BC038579
      Related
      ENST00000631195.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

      Range
      129612116..129617269 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060935.1 Alternate T2T-CHM13v2.0

      Range
      129647842..129652995 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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