U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    TRPC7 transient receptor potential cation channel subfamily C member 7 [ Homo sapiens (human) ]

    Gene ID: 57113, updated on 27-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    TRPC7provided by HGNC
    Official Full Name
    transient receptor potential cation channel subfamily C member 7provided by HGNC
    Primary source
    HGNC:HGNC:20754
    See related
    Ensembl:ENSG00000069018 AllianceGenome:HGNC:20754
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    TRP7
    Summary
    Predicted to enable inositol 1,4,5 trisphosphate binding activity and store-operated calcium channel activity. Predicted to be involved in calcium ion transmembrane transport; regulation of cytosolic calcium ion concentration; and single fertilization. Predicted to be located in membrane; nuclear envelope; and perinuclear region of cytoplasm. Predicted to be part of cation channel complex. Predicted to be active in plasma membrane. Implicated in lung cancer. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See TRPC7 in Genome Data Viewer
    Location:
    5q31.1
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (136212745..136365545, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (136735275..136888049, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (135548433..135701233, complement)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16379 Neighboring gene SMAD5 antisense RNA 1 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr5:135488895-135490094 Neighboring gene SMAD family member 5 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:135527733-135528647 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:135528804-135529321 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr5:135537973-135538930 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr5:135538931-135539888 Neighboring gene small integral membrane protein 32 Neighboring gene TRPC7 antisense RNA 1 Neighboring gene TRPC7 antisense RNA 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:135586892-135587392 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23180 Neighboring gene uncharacterized LOC124901075 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:135717435-135718266 Neighboring gene heat shock protein family D (Hsp60) member 1 pseudogene 18 Neighboring gene heterogeneous nuclear ribonucleoprotein A1 pseudogene 13

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Canonical transient receptor potential TRPC7 can function as both a receptor- and store-operated channel in HEK-293 cells. Lièvremont JP, et al. Am J Physiol Cell Physiol, 2004 Dec. PMID 15342342
    2. TRPC7 is a receptor-operated DAG-activated channel in human keratinocytes. Beck B, et al. J Invest Dermatol, 2006 Sep. PMID 16741513
    3. TRPC7. Numaga T, et al. Handb Exp Pharmacol, 2007. PMID 17217055
    4. Importance of melastatin-like transient receptor potential 7 and cations (magnesium, calcium) in human osteoblast-like cell proliferation. Abed E, et al. Cell Prolif, 2007 Dec. PMID 18021175, Free PMC Article
    5. Cloning and functional expression of human short TRP7, a candidate protein for store-operated Ca2+ influx. Riccio A, et al. J Biol Chem, 2002 Apr 5. PMID 11805119

    See all (21) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Nociceptive transient receptor potential canonical 7 (TRPC7) mediates aging-associated tumorigenesis induced by ultraviolet B.
      Title: Nociceptive transient receptor potential canonical 7 (TRPC7) mediates aging-associated tumorigenesis induced by ultraviolet B.
    2. A fundamental role for PI(4,5)P2 was identified in the regulation of TRPC7 and TRPC6.
      Title: PLC-mediated PI(4,5)P2 hydrolysis regulates activation and inactivation of TRPC6/7 channels.
    3. Phosphorylation of transient receptor potential cation channel subfamily C member 7 significantly suppressed carbachol-induced calcium influx and CREB phosphorylation.
      Title: Functional regulation of transient receptor potential canonical 7 by cGMP-dependent protein kinase Iα.
    4. Clinical trial of gene-disease association and gene-environment interaction. (HuGE Navigator)
      Title: Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.
    5. heteromeric cation channels comprised of the TRPP2 mutant and the TRPC3 or TRPC7 protein induce enhanced receptor-activated Ca(2+) influx that may lead to dysregulated cell growth in ADPKD
      Title: A pathogenic C terminus-truncated polycystin-2 mutant enhances receptor-activated Ca2+ entry via association with TRPC3 and TRPC7.
    6. Observational study of gene-disease association. (HuGE Navigator)
      Title: Integrated genomic analysis implicates haploinsufficiency of multiple chromosome 5q31.2 genes in de novo myelodysplastic syndromes pathogenesis.
    7. Expression and activity of TRPM7 is modulated by extracellular Mg2+ and Ca2+ availability, indicating that TRPM7 channels are involved in intracellular ion homeostasis and proliferation of osteoblasts.
      Title: Importance of melastatin-like transient receptor potential 7 and cations (magnesium, calcium) in human osteoblast-like cell proliferation.
    8. activation of both muscarinic and purinergic receptors via a common DAG-dependent link opens Ca(2+)-permeable TRPC7 channels
      Title: TRPC7 is a receptor-operated DAG-activated channel in human keratinocytes.
    9. the physiological importance of TRPC7 in the native environment remains elusive, TRPC7 would play important roles in Ca2+ signaling pathway--{REVIEW}
      Title: TRPC7.
    10. can be activated by both receptor- and store-operated modes in the same cell.
      Title: Canonical transient receptor potential TRPC7 can function as both a receptor- and store-operated channel in HEK-293 cells.
    Submit: New GeneRIF Correction See all GeneRIFs (13)

    Phenotypes

    Go to the top of the page Help

    Find tests for this gene in the NIH Genetic Testing Registry (GTR)

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

    Go to the top of the page Help

    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Pathways from PubChem

    Go to the top of the page

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables calcium channel activity TAS
    Traceable Author Statement
    more info
    		  
    enables inositol 1,4,5 trisphosphate binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables store-operated calcium channel activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in calcium ion transmembrane transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in calcium ion transmembrane transport TAS
    Traceable Author Statement
    more info
    		  
    involved_in manganese ion transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in regulation of cytosolic calcium ion concentration IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in single fertilization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of cation channel complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nuclear envelope IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in perinuclear region of cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane TAS
    Traceable Author Statement
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    short transient receptor potential channel 7
    Names
    likley ortholog of mouse transient receptor potential cation channel, subfamily C, member 7
    putative capacitative calcium channel
    transient receptor protein 7
    NP_001161048.1
    NP_001161049.1
    NP_001363830.1
    NP_065122.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001167576.2 → NP_001161048.1  short transient receptor potential channel 7 isoform 3

      See identical proteins and their annotated locations for NP_001161048.1

      Status: VALIDATED

      Source sequence(s)
      AC008661
      Consensus CDS
      CCDS54905.1
      UniProtKB/TrEMBL
      Q8IWP8
      Related
      ENSP00000330322.5, ENST00000352189.8
      Conserved Domains (2) summary
      TIGR00870
      Location:27 → 706
      trp; transient-receptor-potential calcium channel protein
      sd00045
      Location:77 → 108
      ANK; ANK repeat [structural motif]

    2. NM_001167577.2 → NP_001161049.1  short transient receptor potential channel 7 isoform 2

      See identical proteins and their annotated locations for NP_001161049.1

      Status: VALIDATED

      Source sequence(s)
      AC008661
      Consensus CDS
      CCDS54906.1
      UniProtKB/TrEMBL
      Q8IWP8
      Related
      ENSP00000367720.3, ENST00000378459.7
      Conserved Domains (2) summary
      TIGR00870
      Location:27 → 761
      trp; transient-receptor-potential calcium channel protein
      sd00045
      Location:77 → 108
      ANK; ANK repeat [structural motif]

    3. NM_001376901.1 → NP_001363830.1  short transient receptor potential channel 7 isoform 4

      Status: VALIDATED

      Source sequence(s)
      AC008661
      Consensus CDS
      CCDS93787.1
      UniProtKB/TrEMBL
      H0Y9S0, Q70T25, Q8IWP8
      Related
      ENSP00000424854.3, ENST00000502753.4
      Conserved Domains (2) summary
      TIGR00870
      Location:27 → 767
      trp; transient-receptor-potential calcium channel protein
      sd00045
      Location:77 → 108
      ANK; ANK repeat [structural motif]

    4. NM_020389.3 → NP_065122.1  short transient receptor potential channel 7 isoform 1

      See identical proteins and their annotated locations for NP_065122.1

      Status: VALIDATED

      Source sequence(s)
      AC008661
      Consensus CDS
      CCDS47267.2
      UniProtKB/Swiss-Prot
      A1A4Z4, F5H5U9, Q70T26, Q8IWP7, Q9HCX4
      UniProtKB/TrEMBL
      Q8WWL3
      Related
      ENSP00000426070.2, ENST00000513104.6
      Conserved Domains (2) summary
      TIGR00870
      Location:27 → 822
      trp; transient-receptor-potential calcium channel protein
      sd00045
      Location:77 → 108
      ANK; ANK repeat [structural motif]

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      136212745..136365545 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      136735275..136888049 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9HCX4.1 GenPept UniProtKB/Swiss-Prot:Q9HCX4

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools
    Miscellaneous