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    LINC02180 long intergenic non-protein coding RNA 2180 [ Homo sapiens (human) ]

    Gene ID: 102467079, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC02180provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2180provided by HGNC
    Primary source
    HGNC:HGNC:53042
    See related
    Ensembl:ENSG00000261749 AllianceGenome:HGNC:53042
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 3.2) See more
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    Genomic context

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    See LINC02180 in Genome Data Viewer
    Location:
    16q12.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (52085281..52099067)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (57882970..57896742)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (52119193..52132979)

    Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2911 Neighboring gene long intergenic non-protein coding RNA 919 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:52152392-52152892 Neighboring gene uncharacterized LOC105371261 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr16:52299165-52300032 Neighboring gene uncharacterized LOC107983961 Neighboring gene cancer susceptibility 22

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_104655.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC009039, BX106698
      Related
      ENST00000566439.3

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

      Range
      52085281..52099067
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060940.1 Alternate T2T-CHM13v2.0

      Range
      57882970..57896742
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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