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    LOC102724511 uncharacterized LOC102724511 [ Homo sapiens (human) ]

    Gene ID: 102724511, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC102724511
    Gene description
    uncharacterized LOC102724511
    See related
    Ensembl:ENSG00000232197
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 1.7) See more
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    Genomic context

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    See LOC102724511 in Genome Data Viewer
    Location:
    6q27
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (170160642..170163027)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (171522442..171524829)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (170475866..170478251)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene proline-rich receptor-like protein kinase PERK10 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:170462430-170463234 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17801 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:170467761-170468664 Neighboring gene uncharacterized LOC105378153 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:170475855-170476719 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:170479250-170480187 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:170496100-170496307 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:170500920-170501494 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:170504194-170504694 Neighboring gene ribosomal protein L12 pseudogene 23 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:170521815-170522322 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:170522323-170522829 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:170523369-170523870 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:170523871-170524370 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:170532303-170533284 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:170535247-170536227 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:170541906-170542750 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:170543843-170544393 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:170544394-170544943 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:170553487-170554252 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:170554253-170555018 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:170560847-170561347 Neighboring gene uncharacterized LOC154449

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_125878.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BX092407, HY033083
      Related
      ENST00000801841.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      170160642..170163027
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      171522442..171524829
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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