nol10 nucleolar protein 10 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: nol10provided by ZNC
Official Full Name: nucleolar protein 10provided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-764
See related: Ensembl:ENSDARG00000020077 AllianceGenome:ZFIN:ZDB-GENE-040426-764
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fa05d07; flj14075; zgc:55626; wu:fa05d07
Summary: Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to be located in nucleus. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Orthologous to human NOL10 (nucleolar protein 10). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 17

Exon count:: 21

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	17	NC_007128.7 (51682429..51720803)
105	previous assembly	GRCz10 (GCF_000002035.5)	17	NC_007128.6 (51593394..51631768)

Chromosome 17 - NC_007128.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Markers

fi89e11.x1 (e-PCR)
- UniSTS:198176

fa01d07.s1 (e-PCR)
- UniSTS:202121

fa05d07.s1 (e-PCR)
- UniSTS:202216

Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in nucleolus	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	IEA Inferred from Electronic Annotation more info
part_of small-subunit processome	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: nucleolar protein 10

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_200237.1 → NP_956531.1 nucleolar protein 10

See identical proteins and their annotated locations for NP_956531.1

Status: PROVISIONAL

Source sequence(s)

BC047174

UniProtKB/Swiss-Prot

Q6TNU2, Q802W4

UniProtKB/TrEMBL

B2GQM3

Related

ENSDARP00000018924.5, ENSDART00000004379.7

Conserved Domains (4) summary

COG2319
Location:4 → 311

WD40; WD40 repeat [General function prediction only]

pfam08159
Location:482 → 508

NUC153; NUC153 domain

sd00039
Location:180 → 215

7WD40; WD40 repeat [structural motif]

cl02567
Location:121 → 337

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...