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    Ankef1 ankyrin repeat and EF-hand domain containing 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 296184, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Ankef1provided by RGD
    Official Full Name
    ankyrin repeat and EF-hand domain containing 1provided by RGD
    Primary source
    RGD:1304809
    See related
    EnsemblRapid:ENSRNOG00000005792 AllianceGenome:RGD:1304809
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Ankrd5
    Summary
    Orthologous to human ANKEF1 (ankyrin repeat and EF-hand domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 73.9), Adrenal (RPKM 51.9) and 6 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ankef1 in Genome Data Viewer
    Location:
    3q36
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (144300500..144335759)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (123847832..123883060)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (129462446..129536423)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene p21 (RAC1) activated kinase 5 Neighboring gene small Cajal body-specific RNA 4 like 2 Neighboring gene uncharacterized LOC134486160 Neighboring gene uncharacterized LOC108350472 Neighboring gene uncharacterized LOC134486161 Neighboring gene synaptosome associated protein 25 Neighboring gene uncharacterized LOC120101685

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    ankyrin repeat and EF-hand domain-containing protein 1
    Names
    ankyrin repeat domain 5
    ankyrin repeat domain-containing protein 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001393870.1 → NP_001380799.1  ankyrin repeat and EF-hand domain-containing protein 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003
      UniProtKB/TrEMBL
      A6HQK0, D4A9E7
      Related
      ENSRNOP00000007893.4, ENSRNOT00000007893.7
      Conserved Domains (4) summary
      PHA02876
      Location:161 → 589
      PHA02876; ankyrin repeat protein; Provisional
      sd00045
      Location:527 → 555
      ANK; ANK repeat [structural motif]
      pfam13637
      Location:501 → 545
      Ank_4; Ankyrin repeats (many copies)
      pfam12796
      Location:529 → 621
      Ank_2; Ankyrin repeats (3 copies)

    RNA

    1. NR_172025.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      144300500..144335759
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_010064586.1 RNA Sequence

    2. XR_010064585.1 RNA Sequence

    3. XR_010064587.1 RNA Sequence

    4. XR_005501825.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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