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    RPL2B ribosomal 60S subunit protein L2B [ Saccharomyces cerevisiae S288C ]

    Gene ID: 854794, updated on 9-Dec-2024

    Summary

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    Official Symbol
    RPL2B
    Official Full Name
    ribosomal 60S subunit protein L2B
    Primary source
    SGD:S000001280
    Locus tag
    YIL018W
    See related
    AllianceGenome:SGD:S000001280; FungiDB:YIL018W; VEuPathDB:YIL018W
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Also known as
    LOT2; RPL5A
    Summary
    A structural constituent of ribosome. Involved in cytoplasmic translation. Part of cytosolic large ribosomal subunit. Used to study Diamond-Blackfan anemia. Orthologous to human RPL8 (ribosomal protein L8). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See RPL2B in Genome Data Viewer
    Location:
    chromosome: IX
    Exon count:
    2
    Sequence:
    Chromosome: IX; NC_001141.2 (316768..317932)

    Chromosome IX - NC_001141.2Genomic Context describing neighboring genes Neighboring gene 1-(5-phosphoribosyl)-5- ((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase HIS6 Neighboring gene Faf1p Neighboring gene glucose-induced degradation complex subunit VID28 Neighboring gene Snl1p

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001141.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The ABF1 factor is the transcriptional activator of the L2 ribosomal protein genes in Saccharomyces cerevisiae. Della Seta F, et al. Mol Cell Biol, 1990 May. PMID 2183035, Free PMC Article
    2. Characterisation of Saccharomyces cerevisiae genes encoding ribosomal protein YL6. Moore J, et al. Mol Gen Genet, 1995 Apr 20. PMID 7753035
    3. Multiple mechanisms regulate expression of low temperature responsive (LOT) genes in Saccharomyces cerevisiae. Zhang L, et al. Biochem Biophys Res Commun, 2001 May 4. PMID 11327734
    4. Specialized ribosomes and specific ribosomal protein paralogs control translation of mitochondrial proteins. Segev N, et al. J Cell Biol, 2018 Jan 2. PMID 29118025, Free PMC Article
    5. Yeast Trf5p is a nuclear poly(A) polymerase. Houseley J, et al. EMBO Rep, 2006 Feb. PMID 16374505, Free PMC Article

    See all (86) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables rRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables structural constituent of ribosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in cytoplasmic translation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in cytoplasmic translation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of cytosolic large ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of cytosolic large ribosomal subunit IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytosolic ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ribosomal 60S subunit protein L2B
    NP_012246.1
    • Ribosomal 60S subunit protein L2B; homologous to mammalian ribosomal protein L2 and bacterial L2; RPL2B has a paralog, RPL2A, that arose from the whole genome duplication; expression is upregulated at low temperatures

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001141.2 Reference assembly

      Range
      316768..317932
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001179368.1 → NP_012246.1  TPA: ribosomal 60S subunit protein L2B [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_012246.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D6VTR2, P05736, P0CX45, P0CX46
      UniProtKB/TrEMBL
      A6ZVP9, B3LTM6, B3LUP0, C8Z7W6, G2WGC6, N1P6U2
      Conserved Domains (1) summary
      cl40667
      Location:1 → 252
      RplB; Ribosomal protein L2 [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P0CX45.1
    P0CX46.1

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