U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    TRP5 tryptophan synthase TRP5 [ Saccharomyces cerevisiae S288C ]

    Gene ID: 852858, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    TRP5
    Official Full Name
    tryptophan synthase TRP5
    Primary source
    SGD:S000002994
    Locus tag
    YGL026C
    See related
    AllianceGenome:SGD:S000002994; FungiDB:YGL026C; VEuPathDB:YGL026C
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Enables tryptophan synthase activity. Involved in tryptophan biosynthetic process. Located in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Dec 2024]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See TRP5 in Genome Data Viewer
    Location:
    chromosome: VII
    Exon count:
    1
    Sequence:
    Chromosome: VII; NC_001139.9 (446412..448535, complement)

    Chromosome VII - NC_001139.9Genomic Context describing neighboring genes Neighboring gene putative glucan endo-1,3-beta-D-glucosidase Neighboring gene mannosyl-oligosaccharide glucosidase Neighboring gene Pgd1p Neighboring gene Pib2p

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_001139.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sodium azide-induced mutagenesis in Saccharomyces cerevisiae. Silhánková L, et al. Mutat Res, 1979 Jul. PMID 39251
    2. Saccharomyces cerevisiae genes involved in survival of heat shock. Jarolim S, et al. G3 (Bethesda), 2013 Dec 9. PMID 24142923, Free PMC Article
    3. TRYPTOPHAN SYNTHETASE MUTANTS OF YEAST: ACTION OF A SUPER-SUPPRESSOR IN RELATION TO ALLELIC MAPPING AND COMPLEMENTATION. UCRL-11191. MANNEY TR. UCRL US At Energy Comm, 1964 Jan 8. PMID 24547113
    4. Characterization of the trp5-27 allele used to monitor drug-induced mitotic gene conversion in the Saccharomyces cerevisiae tester strain D7. Ehrenhofer-Murray AE, et al. Mutagenesis, 1994 Jul. PMID 7968581
    5. Purification and properties of tryptophan synthase from baker's yeast (Saccharomyces cerevisiae). Bailey CJ, et al. Biochem J, 1983 Jan 1. PMID 6342605, Free PMC Article

    See all (84) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

    Go to the top of the page

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables tryptophan synthase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables tryptophan synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in tryptophan biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in tryptophan biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in tryptophan biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in tryptophan metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm HDA PubMed 
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    tryptophan synthase TRP5
    NP_011489.1
    • Tryptophan synthase; catalyzes the last step of tryptophan biosynthesis; regulated by the general control system of amino acid biosynthesis

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001139.9 Reference assembly

      Range
      446412..448535 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001180891.1 → NP_011489.1  TPA: tryptophan synthase TRP5 [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_011489.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D6VUB2, P00931
      UniProtKB/TrEMBL
      B3LIN9, C8Z8L6, N1P5K3
      Conserved Domains (2) summary
      PRK04346
      Location:305 → 688
      PRK04346; tryptophan synthase subunit beta; Validated
      pfam00290
      Location:9 → 259
      Trp_syntA; Tryptophan synthase alpha chain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P00931.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools