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    NOP56 NOP56 ribonucleoprotein [ Bos taurus (domestic cattle) ]

    Gene ID: 404165, updated on 29-Jan-2025

    Summary

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    Official Symbol
    NOP56provided by VGNC
    Official Full Name
    NOP56 ribonucleoproteinprovided by VGNC
    Primary source
    VGNC:VGNC:32169
    See related
    BGD:BT14266; Ensembl:ENSBTAG00000018812
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    NOL5A
    Orthologs
    human mouse all
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    Genomic context

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    See NOP56 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 13 NC_037340.1 (52519428..52524666, complement)

    Chromosome 13 - NC_037340.1Genomic Context describing neighboring genes Neighboring gene EBF family member 4 Neighboring gene STE20-related kinase adapter protein alpha-like Neighboring gene small nucleolar RNA SNORD57 Neighboring gene small nucleolar RNA SNORD56 Neighboring gene small nucleolar RNA SNORD86 Neighboring gene small nucleolar RNA SNORA51 Neighboring gene small nucleolar RNA SNORD110 Neighboring gene isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta Neighboring gene transmembrane channel like 2 Neighboring gene small nuclear ribonucleoprotein polypeptides B and B1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037340.1 Chromosome 13 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC128411

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables snoRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of box C/D methylation guide snoRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of small-subunit processome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nucleolar protein 56
    Names
    NOP56 ribonucleoprotein homolog
    nucleolar protein 5A (56kDa with KKE/D repeat)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001033622.2 → NP_001028794.1  nucleolar protein 56

      Status: PROVISIONAL

      Source sequence(s)
      BC103114
      UniProtKB/Swiss-Prot
      Q3SZ63
      Related
      ENSBTAP00070041489.1, ENSBTAT00070067931.1
      Conserved Domains (3) summary
      smart00931
      Location:168 → 219
      NOSIC; NOSIC (NUC001) domain
      pfam01798
      Location:174 → 405
      Nop; snoRNA binding domain, fibrillarin
      pfam08156
      Location:5 → 70
      NOP5NT; NOP5NT (NUC127) domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037340.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      52519428..52524666 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3SZ63.1 GenPept UniProtKB/Swiss-Prot:Q3SZ63

    Gene LinkOut

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