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    TANK TRAF family member associated NFKB activator [ Bos taurus (domestic cattle) ]

    Gene ID: 539513, updated on 30-Jan-2025

    Summary

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    Official Symbol
    TANKprovided by VGNC
    Official Full Name
    TRAF family member associated NFKB activatorprovided by VGNC
    Primary source
    VGNC:VGNC:35594
    See related
    BGD:BT21203; EnsemblRapid:ENSBTAG00070028721
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See TANK in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 2 NC_037329.1 (35143374..35239511, complement)

    Chromosome 2 - NC_037329.1Genomic Context describing neighboring genes Neighboring gene large ribosomal subunit protein uL30-like Neighboring gene transfer RNA leucine (anticodon CAA) Neighboring gene uncharacterized LOC132342965 Neighboring gene transmembrane protein 126A-like Neighboring gene uncharacterized LOC101906588 Neighboring gene RNA binding motif single stranded interacting protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037329.1 Chromosome 2 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in canonical NF-kappaB signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    TRAF family member-associated NF-kappa-B activator

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001192264.1 → NP_001179193.1  TRAF family member-associated NF-kappa-B activator

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000002
      UniProtKB/TrEMBL
      A0AAA9TGW9, F6R2Z7
      Related
      ENSBTAP00070039454.1, ENSBTAT00070065359.1
      Conserved Domains (1) summary
      pfam12845
      Location:135 → 186
      TBD; TBD domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037329.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      35143374..35239511 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005202471.5 → XP_005202528.1  TRAF family member-associated NF-kappa-B activator isoform X1

      UniProtKB/TrEMBL
      A0AAA9TT66
      Conserved Domains (1) summary
      pfam12845
      Location:136 → 187
      TBD; TBD domain

    2. XM_024976823.2 → XP_024832591.1  TRAF family member-associated NF-kappa-B activator isoform X1

      UniProtKB/TrEMBL
      A0AAA9TT66
      Conserved Domains (1) summary
      pfam12845
      Location:136 → 187
      TBD; TBD domain

    3. XM_005202472.5 → XP_005202529.1  TRAF family member-associated NF-kappa-B activator isoform X2

      UniProtKB/TrEMBL
      A0AAA9TGW9, F6R2Z7
      Conserved Domains (1) summary
      pfam12845
      Location:135 → 186
      TBD; TBD domain

    4. XM_005202473.5 → XP_005202530.1  TRAF family member-associated NF-kappa-B activator isoform X4

      UniProtKB/TrEMBL
      A0A3Q1LUT1, Q0VD25
      Related
      ENSBTAP00070039418.1, ENSBTAT00070065317.1
      Conserved Domains (1) summary
      pfam12845
      Location:135 → 186
      TBD; TBD domain

    5. XM_005202474.5 → XP_005202531.1  TRAF family member-associated NF-kappa-B activator isoform X1

      UniProtKB/TrEMBL
      A0AAA9TT66
      Related
      ENSBTAP00070039435.1, ENSBTAT00070065337.1
      Conserved Domains (1) summary
      pfam12845
      Location:136 → 187
      TBD; TBD domain

    6. XM_059875982.1 → XP_059731965.1  TRAF family member-associated NF-kappa-B activator isoform X3

      UniProtKB/TrEMBL
      Q0VD25

    7. XM_010802011.4 → XP_010800313.1  TRAF family member-associated NF-kappa-B activator isoform X5

      Conserved Domains (1) summary
      pfam12845
      Location:135 → 173
      TBD; TBD domain
    Nucleotide Protein Strain
    Heading Accession and Version

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