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    LOC511240 protein HP-25 homolog 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 511240, updated on 30-Jan-2025

    Summary

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    Gene symbol
    LOC511240
    Gene description
    protein HP-25 homolog 1
    See related
    BGD:BT16341; EnsemblRapid:ENSBTAG00070019182
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    HP-25
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    Genomic context

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    See LOC511240 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 5 NC_037332.1 (71699527..71702580)

    Chromosome 5 - NC_037332.1Genomic Context describing neighboring genes Neighboring gene synapsin III Neighboring gene TIMP metallopeptidase inhibitor 3 Neighboring gene uncharacterized LOC104972499 Neighboring gene protein HP-25 homolog 2 Neighboring gene protein HP-20 homolog

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037332.1 Chromosome 5 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Seasonal oscillation of liver-derived hibernation protein complex in the central nervous system of non-hibernating mammals. Seldin MM, et al. J Exp Biol, 2014 Aug 1. PMID 25079892, Free PMC Article
    2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC137188

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein HP-25 homolog 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001046080.2 → NP_001039545.1  protein HP-25 homolog 1 precursor

      See identical proteins and their annotated locations for NP_001039545.1

      Status: PROVISIONAL

      Source sequence(s)
      BC112469
      UniProtKB/Swiss-Prot
      Q2KIX7
      UniProtKB/TrEMBL
      A0AAF6ZED5
      Related
      ENSBTAP00070026019.1, ENSBTAT00070043295.1
      Conserved Domains (2) summary
      smart00110
      Location:80 → 209
      C1Q; Complement component C1q domain
      pfam01391
      Location:40 → 77
      Collagen; Collagen triple helix repeat (20 copies)

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037332.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      71699527..71702580
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2KIX7.1 GenPept UniProtKB/Swiss-Prot:Q2KIX7

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