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    ZC3H13 zinc finger CCCH-type containing 13 [ Bos taurus (domestic cattle) ]

    Gene ID: 540735, updated on 30-Jan-2025

    Summary

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    Official Symbol
    ZC3H13provided by VGNC
    Official Full Name
    zinc finger CCCH-type containing 13provided by VGNC
    Primary source
    VGNC:VGNC:37101
    See related
    BGD:BT27781; EnsemblRapid:ENSBTAG00070025970
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See ZC3H13 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 12 NC_037339.1 (16033642..16137401, complement)

    Chromosome 12 - NC_037339.1Genomic Context describing neighboring genes Neighboring gene siah E3 ubiquitin protein ligase family member 3 Neighboring gene uncharacterized LOC112449123 Neighboring gene carboxypeptidase B2 Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene heterogeneous nuclear ribonucleoprotein D-like Neighboring gene lymphocyte cytosolic protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037339.1 Chromosome 12 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nuclear speck IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger CCCH domain-containing protein 13

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037339.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      16033642..16137401 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015473802.3 → XP_015329288.1  zinc finger CCCH domain-containing protein 13 isoform X1

      Conserved Domains (1) summary
      pfam00642
      Location:42 → 63
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

    2. XM_005213706.5 → XP_005213763.1  zinc finger CCCH domain-containing protein 13 isoform X4

      See identical proteins and their annotated locations for XP_005213763.1

      Conserved Domains (1) summary
      pfam00642
      Location:42 → 63
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

    3. XM_002691780.6 → XP_002691826.1  zinc finger CCCH domain-containing protein 13 isoform X3

      See identical proteins and their annotated locations for XP_002691826.1

      UniProtKB/TrEMBL
      A0A3Q1MAG2
      Related
      ENSBTAP00070034940.1, ENSBTAT00070058821.1
      Conserved Domains (1) summary
      pfam00642
      Location:42 → 63
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

    4. XM_015473804.3 → XP_015329290.1  zinc finger CCCH domain-containing protein 13 isoform X2

      UniProtKB/TrEMBL
      A0AAA9TT40
      Related
      ENSBTAP00070034928.1, ENSBTAT00070058802.1
      Conserved Domains (1) summary
      pfam00642
      Location:42 → 63
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

    5. XM_015473801.3 → XP_015329287.1  zinc finger CCCH domain-containing protein 13 isoform X1

      Conserved Domains (1) summary
      pfam00642
      Location:42 → 63
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

    6. XM_059892214.1 → XP_059748197.1  zinc finger CCCH domain-containing protein 13 isoform X1

    7. XM_025000031.2 → XP_024855799.1  zinc finger CCCH domain-containing protein 13 isoform X5

      Conserved Domains (2) summary
      cl25574
      Location:658 → 882
      TOP2c; TopoisomeraseII
      cl28310
      Location:177 → 403
      Rho; Transcription termination factor Rho [Transcription]

    8. XM_059892215.1 → XP_059748198.1  zinc finger CCCH domain-containing protein 13 isoform X5

    9. XM_059892216.1 → XP_059748199.1  zinc finger CCCH domain-containing protein 13 isoform X6

    10. XM_059892217.1 → XP_059748200.1  zinc finger CCCH domain-containing protein 13 isoform X7

    Nucleotide Protein Strain
    Heading Accession and Version

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