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    CTBP1 C-terminal binding protein 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 513131, updated on 30-Jan-2025

    Summary

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    Official Symbol
    CTBP1provided by VGNC
    Official Full Name
    C-terminal binding protein 1provided by VGNC
    Primary source
    VGNC:VGNC:27785
    See related
    BGD:BT18769; EnsemblRapid:ENSBTAG00070000088
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See CTBP1 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 6 NC_037333.1 (117201642..117225831)

    Chromosome 6 - NC_037333.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101904569 Neighboring gene macrophage erythroblast attacher, E3 ubiquitin ligase Neighboring gene uncharacterized LOC100299277 Neighboring gene uncharacterized LOC100848288 Neighboring gene spondin 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037333.1 Chromosome 6 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Analysis of bovine mammary gland EST and functional annotation of the Bos taurus gene index. Sonstegard TS, et al. Mamm Genome, 2002 Jul. PMID 12140684
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables NAD binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coregulator binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    C-terminal-binding protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037333.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      117201642..117225831
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024993765.2 → XP_024849533.1  C-terminal-binding protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A3Q1M504, A5D9F1
      Conserved Domains (1) summary
      cd05299
      Location:17 → 335
      CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

    2. XM_024993760.2 → XP_024849528.1  C-terminal-binding protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A3Q1M504, A5D9F1
      Related
      ENSBTAP00070000100.1, ENSBTAT00070000154.1
      Conserved Domains (1) summary
      cd05299
      Location:17 → 335
      CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

    3. XM_024993758.2 → XP_024849526.1  C-terminal-binding protein 1 isoform X1

      UniProtKB/TrEMBL
      A0AAA9T2P6
      Related
      ENSBTAP00070000101.1, ENSBTAT00070000155.1
      Conserved Domains (1) summary
      cd05299
      Location:28 → 346
      CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

    4. XM_024993759.2 → XP_024849527.1  C-terminal-binding protein 1 isoform X2

      Conserved Domains (1) summary
      cd05299
      Location:28 → 346
      CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

    5. XM_024993764.2 → XP_024849532.1  C-terminal-binding protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A3Q1M504, A5D9F1
      Conserved Domains (1) summary
      cd05299
      Location:17 → 335
      CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

    6. XM_024993762.2 → XP_024849530.1  C-terminal-binding protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A3Q1M504, A5D9F1
      Conserved Domains (1) summary
      cd05299
      Location:17 → 335
      CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

    7. XM_024993761.2 → XP_024849529.1  C-terminal-binding protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A3Q1M504, A5D9F1
      Conserved Domains (1) summary
      cd05299
      Location:17 → 335
      CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor
    Nucleotide Protein Strain
    Heading Accession and Version

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