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    RBM6 RNA binding motif protein 6 [ Bos taurus (domestic cattle) ]

    Gene ID: 100296443, updated on 30-Jan-2025

    Summary

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    Official Symbol
    RBM6provided by VGNC
    Official Full Name
    RNA binding motif protein 6provided by VGNC
    Primary source
    VGNC:VGNC:33807
    See related
    EnsemblRapid:ENSBTAG00070032848
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See RBM6 in Genome Data Viewer
    Location:
    chromosome: 22
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 22 NC_037349.1 (50246633..50336111, complement)

    Chromosome 22 - NC_037349.1Genomic Context describing neighboring genes Neighboring gene RNA binding motif protein 5 Neighboring gene U6 spliceosomal RNA Neighboring gene basic proline-rich protein-like Neighboring gene MON1 homolog A, secretory trafficking associated Neighboring gene macrophage stimulating 1 receptor

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037349.1 Chromosome 22 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA-binding protein 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037349.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      50246633..50336111 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002697034.6 → XP_002697080.2  RNA-binding protein 6 isoform X1

      See identical proteins and their annotated locations for XP_002697080.2

      UniProtKB/TrEMBL
      E1BC65
      Related
      ENSBTAP00070045190.1, ENSBTAT00070074175.1
      Conserved Domains (7) summary
      COG1357
      Location:19 → 237
      YjbI; Uncharacterized protein YjbI, contains pentapeptide repeats [Function unknown]
      cd12314
      Location:456 → 533
      RRM1_RBM6; RNA recognition motif 1 in vertebrate RNA-binding protein 6 (RBM6)
      cd12563
      Location:651 → 737
      RRM2_RBM6; RNA recognition motif 2 in vertebrate RNA-binding protein 6 (RBM6)
      pfam01585
      Location:1048 → 1092
      G-patch; G-patch domain
      pfam13599
      Location:184 → 257
      Pentapeptide_4; Pentapeptide repeats (9 copies)
      cd16074
      Location:769 → 776
      OCRE; OCRE repeat 1 [structural motif]
      cl23757
      Location:763 → 828
      OCRE; OCRE domain

    2. XM_015459644.3 → XP_015315130.1  RNA-binding protein 6 isoform X1

      UniProtKB/TrEMBL
      E1BC65
      Conserved Domains (7) summary
      COG1357
      Location:19 → 237
      YjbI; Uncharacterized protein YjbI, contains pentapeptide repeats [Function unknown]
      cd12314
      Location:456 → 533
      RRM1_RBM6; RNA recognition motif 1 in vertebrate RNA-binding protein 6 (RBM6)
      cd12563
      Location:651 → 737
      RRM2_RBM6; RNA recognition motif 2 in vertebrate RNA-binding protein 6 (RBM6)
      pfam01585
      Location:1048 → 1092
      G-patch; G-patch domain
      pfam13599
      Location:184 → 257
      Pentapeptide_4; Pentapeptide repeats (9 copies)
      cd16074
      Location:769 → 776
      OCRE; OCRE repeat 1 [structural motif]
      cl23757
      Location:763 → 828
      OCRE; OCRE domain

    3. XM_010817854.3 → XP_010816156.1  RNA-binding protein 6 isoform X3

      Conserved Domains (6) summary
      cd12314
      Location:324 → 401
      RRM1_RBM6; RNA recognition motif 1 in vertebrate RNA-binding protein 6 (RBM6)
      cd12563
      Location:519 → 605
      RRM2_RBM6; RNA recognition motif 2 in vertebrate RNA-binding protein 6 (RBM6)
      pfam01585
      Location:916 → 960
      G-patch; G-patch domain
      pfam13599
      Location:52 → 125
      Pentapeptide_4; Pentapeptide repeats (9 copies)
      cd16074
      Location:637 → 644
      OCRE; OCRE repeat 1 [structural motif]
      cl23757
      Location:631 → 696
      OCRE; OCRE domain

    4. XM_059880093.1 → XP_059736076.1  RNA-binding protein 6 isoform X4

    5. XM_010817856.1 → XP_010816158.1  RNA-binding protein 6 isoform X4

      See identical proteins and their annotated locations for XP_010816158.1

      Conserved Domains (3) summary
      cd12563
      Location:129 → 215
      RRM2_RBM6; RNA recognition motif 2 in vertebrate RNA-binding protein 6 (RBM6)
      cd16163
      Location:241 → 306
      OCRE_RBM6; OCRE domain found in RNA-binding protein 6 (RBM6) and similar proteins
      pfam01585
      Location:526 → 570
      G-patch; G-patch domain

    6. XM_010817853.4 → XP_010816155.1  RNA-binding protein 6 isoform X2

      UniProtKB/TrEMBL
      A0AAA9T9C5
      Related
      ENSBTAP00070045207.1, ENSBTAT00070074203.1
      Conserved Domains (6) summary
      COG1357
      Location:19 → 237
      YjbI; Uncharacterized protein YjbI, contains pentapeptide repeats [Function unknown]
      cd12314
      Location:456 → 533
      RRM1_RBM6; RNA recognition motif 1 in vertebrate RNA-binding protein 6 (RBM6)
      cd12563
      Location:651 → 737
      RRM2_RBM6; RNA recognition motif 2 in vertebrate RNA-binding protein 6 (RBM6)
      pfam13599
      Location:184 → 257
      Pentapeptide_4; Pentapeptide repeats (9 copies)
      cd16074
      Location:769 → 776
      OCRE; OCRE repeat 1 [structural motif]
      cl23757
      Location:763 → 828
      OCRE; OCRE domain
    Nucleotide Protein Strain
    Heading Accession and Version

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