U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    PRICKLE1 prickle planar cell polarity protein 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 785152, updated on 30-Jan-2025

    Summary

    Go to the top of the page Help
    Official Symbol
    PRICKLE1provided by VGNC
    Official Full Name
    prickle planar cell polarity protein 1provided by VGNC
    Primary source
    VGNC:VGNC:33315
    See related
    EnsemblRapid:ENSBTAG00070005318
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See PRICKLE1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 5 NC_037332.1 (38058247..38171666)

    Chromosome 5 - NC_037332.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA62/SNORA6 family Neighboring gene NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12-like Neighboring gene uncharacterized LOC112446689 Neighboring gene microRNA mir-12005-2 Neighboring gene microRNA mir-12005-1 Neighboring gene periphilin 1 Neighboring gene sorting nexin-4-like Neighboring gene zinc finger CCHC-type and RNA binding motif containing 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_037332.1 Chromosome 5 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Clone Names

    • MGC148920

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    prickle-like protein 1
    Names
    prickle homolog 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001102534.2 → NP_001096004.1  prickle-like protein 1

      See identical proteins and their annotated locations for NP_001096004.1

      Status: VALIDATED

      Source sequence(s)
      NKLS02000005
      UniProtKB/TrEMBL
      A0A3Q1LMK1, A5D7T1, F1MZ06
      Related
      ENSBTAP00070006838.1, ENSBTAT00070012143.1
      Conserved Domains (4) summary
      cd09418
      Location:189 → 244
      LIM2_Prickle; The second LIM domain of Prickle
      cd09420
      Location:249 → 307
      LIM3_Prickle; The third LIM domain of Prickle
      cd09483
      Location:126 → 184
      LIM1_Prickle_1; The first LIM domain of Prickle 1
      cd09827
      Location:22 → 118
      PET_Prickle; The PET domain of Prickle

    2. NM_001428300.1 → NP_001415229.1  prickle-like protein 1 isoform 1

      Status: VALIDATED

      Source sequence(s)
      NKLS02000005
      UniProtKB/TrEMBL
      A0A3Q1LMK1, A5D7T1, F1MZ06

    3. NM_001428301.1 → NP_001415230.1  prickle-like protein 1

      Status: VALIDATED

      Source sequence(s)
      NKLS02000005
      UniProtKB/TrEMBL
      A0A3Q1LMK1, A5D7T1, F1MZ06

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037332.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      38058247..38171666
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024992310.2 → XP_024848078.1  prickle-like protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A3Q1LMK1, A0AAF6DLQ2
      Conserved Domains (4) summary
      cd09418
      Location:190 → 245
      LIM2_Prickle; The second LIM domain of Prickle
      cd09420
      Location:250 → 308
      LIM3_Prickle; The third LIM domain of Prickle
      cd09483
      Location:127 → 185
      LIM1_Prickle_1; The first LIM domain of Prickle 1
      cd09827
      Location:23 → 119
      PET_Prickle; The PET domain of Prickle

    2. XM_024992308.2 → XP_024848076.1  prickle-like protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1LF59, A0A3Q1LMK1
      Related
      ENSBTAP00070006837.1, ENSBTAT00070012139.1
      Conserved Domains (4) summary
      cd09418
      Location:213 → 268
      LIM2_Prickle; The second LIM domain of Prickle
      cd09420
      Location:273 → 331
      LIM3_Prickle; The third LIM domain of Prickle
      cd09483
      Location:150 → 208
      LIM1_Prickle_1; The first LIM domain of Prickle 1
      cd09827
      Location:46 → 142
      PET_Prickle; The PET domain of Prickle

    3. XM_024992309.2 → XP_024848077.1  prickle-like protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A3Q1LMK1
      Conserved Domains (4) summary
      cd09418
      Location:212 → 267
      LIM2_Prickle; The second LIM domain of Prickle
      cd09420
      Location:272 → 330
      LIM3_Prickle; The third LIM domain of Prickle
      cd09483
      Location:149 → 207
      LIM1_Prickle_1; The first LIM domain of Prickle 1
      cd09827
      Location:45 → 141
      PET_Prickle; The PET domain of Prickle

    4. XM_059886790.1 → XP_059742773.1  prickle-like protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A3Q1LMK1, A0AAF6DLQ2

    5. XM_059886791.1 → XP_059742774.1  prickle-like protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A3Q1LMK1, A0AAF6DLQ2
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials