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    BCLAF1 BCL2 associated transcription factor 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 540648, updated on 27-Dec-2024

    Summary

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    Official Symbol
    BCLAF1provided by VGNC
    Official Full Name
    BCL2 associated transcription factor 1provided by VGNC
    Primary source
    VGNC:VGNC:26451
    See related
    Ensembl:ENSBTAG00000007802
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See BCLAF1 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 9 NC_037336.1 (74256679..74287573, complement)

    Chromosome 9 - NC_037336.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104969602 Neighboring gene phosphodiesterase 7B Neighboring gene mitochondrial fission regulator 2 Neighboring gene uncharacterized LOC112448068 Neighboring gene zinc finger protein 639-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037336.1 Chromosome 9 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Clone Names

    • MGC139150

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of mediator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    bcl-2-associated transcription factor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001098117.1 → NP_001091586.1  bcl-2-associated transcription factor 1

      See identical proteins and their annotated locations for NP_001091586.1

      Status: PROVISIONAL

      Source sequence(s)
      BC140498
      UniProtKB/TrEMBL
      A0A3Q1LVH1, A5D7B8
      Conserved Domains (2) summary
      pfam15440
      Location:157 → 746
      THRAP3_BCLAF1; THRAP3/BCLAF1 family
      cl09653
      Location:828 → 893
      Btz; CASC3/Barentsz eIF4AIII binding

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037336.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      74256679..74287573 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005210976.5 → XP_005211033.1  bcl-2-associated transcription factor 1 isoform X4

      See identical proteins and their annotated locations for XP_005211033.1

      UniProtKB/TrEMBL
      A0A3Q1LVH1
      Conserved Domains (1) summary
      pfam15440
      Location:155 → 744
      THRAP3_BCLAF1; THRAP3/BCLAF1 family

    2. XM_005210974.5 → XP_005211031.1  bcl-2-associated transcription factor 1 isoform X2

      See identical proteins and their annotated locations for XP_005211031.1

      UniProtKB/TrEMBL
      A0A3Q1LVH1, F1MQU4
      Related
      ENSBTAP00000052174.3, ENSBTAT00000052712.4
      Conserved Domains (2) summary
      pfam15440
      Location:155 → 744
      THRAP3_BCLAF1; THRAP3/BCLAF1 family
      cl09653
      Location:826 → 891
      Btz; CASC3/Barentsz eIF4AIII binding

    3. XM_005210975.5 → XP_005211032.1  bcl-2-associated transcription factor 1 isoform X3

      See identical proteins and their annotated locations for XP_005211032.1

      UniProtKB/TrEMBL
      A0A3Q1LVH1
      Related
      ENSBTAP00000061396.2, ENSBTAT00000077730.2
      Conserved Domains (1) summary
      pfam15440
      Location:157 → 746
      THRAP3_BCLAF1; THRAP3/BCLAF1 family

    4. XM_024996803.2 → XP_024852571.1  bcl-2-associated transcription factor 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1LVH1
      Conserved Domains (2) summary
      pfam15440
      Location:157 → 746
      THRAP3_BCLAF1; THRAP3/BCLAF1 family
      cl09653
      Location:828 → 893
      Btz; CASC3/Barentsz eIF4AIII binding

    RNA

    1. XR_009495802.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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