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    SEC23A SEC23 homolog A, COPII coat complex component [ Bos taurus (domestic cattle) ]

    Gene ID: 533994, updated on 30-Jan-2025

    Summary

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    Official Symbol
    SEC23Aprovided by VGNC
    Official Full Name
    SEC23 homolog A, COPII coat complex componentprovided by VGNC
    Primary source
    VGNC:VGNC:34410
    See related
    EnsemblRapid:ENSBTAG00070016574
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See SEC23A in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 21 NC_037348.1 (49038038..49118936, complement)

    Chromosome 21 - NC_037348.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC540013 Neighboring gene somatostatin receptor 1 Neighboring gene C-type lectin domain containing 14A Neighboring gene uncharacterized LOC101904185 Neighboring gene kinesin-like protein KIF20B Neighboring gene trafficking protein particle complex subunit 6B Neighboring gene gem nuclear organelle associated protein 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037348.1 Chromosome 21 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Clone Names

    • MGC143381

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTPase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in COPII-coated vesicle budding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in COPII-coated vesicle cargo loading IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of COPII vesicle coat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum exit site IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein transport protein Sec23A
    Names
    SEC23-related protein A
    Sec23 homolog A, coat complex II component

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001435085.1 → NP_001422014.1  protein transport protein Sec23A

      Status: VALIDATED

      Source sequence(s)
      NKLS02000021
      Related
      ENSBTAP00070021870.1, ENSBTAT00070037191.1

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037348.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      49038038..49118936 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005222100.5 → XP_005222157.1  protein transport protein Sec23A isoform X1

      See identical proteins and their annotated locations for XP_005222157.1

      UniProtKB/TrEMBL
      A0AAA9RUE7, F1MVW5
      Conserved Domains (1) summary
      PLN00162
      Location:12 → 763
      PLN00162; transport protein sec23; Provisional

    2. XM_024981874.2 → XP_024837642.1  protein transport protein Sec23A isoform X1

      UniProtKB/TrEMBL
      A0AAA9RUE7, F1MVW5
      Conserved Domains (1) summary
      PLN00162
      Location:12 → 763
      PLN00162; transport protein sec23; Provisional

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001081604.1: Suppressed sequence

      Description
      NM_001081604.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A2VDL8.1 GenPept UniProtKB/Swiss-Prot:A2VDL8

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.