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    COG4 component of oligomeric golgi complex 4 [ Bos taurus (domestic cattle) ]

    Gene ID: 533007, updated on 1-Jan-2025

    Summary

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    Official Symbol
    COG4provided by VGNC
    Official Full Name
    component of oligomeric golgi complex 4provided by VGNC
    Primary source
    VGNC:VGNC:27549
    See related
    BGD:BT18285; Ensembl:ENSBTAG00000012988
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See COG4 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 18 NC_037345.1 (1618164..1643272)

    Chromosome 18 - NC_037345.1Genomic Context describing neighboring genes Neighboring gene splicing factor 3b subunit 3 Neighboring gene small nucleolar RNA SNORD111 Neighboring gene small nucleolar RNA SNORD111 Neighboring gene fucose kinase Neighboring gene ST3 beta-galactoside alpha-2,3-sialyltransferase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037345.1 Chromosome 18 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Clone Names

    • MGC129017

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in Golgi organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Golgi transport complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    conserved oligomeric Golgi complex subunit 4
    Names
    COG complex subunit 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001034583.1 → NP_001029755.1  conserved oligomeric Golgi complex subunit 4

      See identical proteins and their annotated locations for NP_001029755.1

      Status: PROVISIONAL

      Source sequence(s)
      BC105251
      UniProtKB/Swiss-Prot
      Q3MHG0
      Related
      ENSBTAP00000017269.4, ENSBTAT00000017269.5
      Conserved Domains (2) summary
      pfam08318
      Location:188 → 497
      COG4; COG4 transport protein
      cl19885
      Location:547 → 784
      Sec6; Exocyst complex component Sec6

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037345.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      1618164..1643272
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3MHG0.1 GenPept UniProtKB/Swiss-Prot:Q3MHG0

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.