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    GJC1 gap junction protein gamma 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 511119, updated on 12-Oct-2024

    Summary

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    Official Symbol
    GJC1provided by VGNC
    Official Full Name
    gap junction protein gamma 1provided by VGNC
    Primary source
    VGNC:VGNC:29382
    See related
    BGD:BT24487; Ensembl:ENSBTAG00000060625
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    CXNQ; GJA7
    Orthologs
    human mouse all
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    Genomic context

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    See GJC1 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 19 NC_037346.1 (44522960..44555505, complement)

    Chromosome 19 - NC_037346.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 43 Neighboring gene DBF4 zinc finger B Neighboring gene ADAM metallopeptidase domain 11 Neighboring gene HIG1 hypoxia inducible domain family member 1B Neighboring gene elongation factor Tu GTP binding domain containing 2 Neighboring gene microRNA mir-2343

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037346.1 Chromosome 19 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Clone Names

    • MGC138040

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cell communication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of connexin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    gap junction gamma-1 protein
    Names
    connexin Q
    gap junction alpha-7 protein
    gap junction protein, alpha 7, 45kDa
    gap junction protein, delta 3, 31.9kDa
    gap junction protein, gamma 1, 45kDa

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001046076.1 → NP_001039541.1  gap junction gamma-1 protein

      See identical proteins and their annotated locations for NP_001039541.1

      Status: PROVISIONAL

      Source sequence(s)
      BC113285
      UniProtKB/Swiss-Prot
      Q2HJ66
      UniProtKB/TrEMBL
      A0A654ICP4
      Conserved Domains (1) summary
      pfam00029
      Location:2 → 255
      Connexin

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037346.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      44522960..44555505 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005220851.5 → XP_005220908.1  gap junction gamma-1 protein isoform X1

      See identical proteins and their annotated locations for XP_005220908.1

      UniProtKB/Swiss-Prot
      Q2HJ66
      UniProtKB/TrEMBL
      A0A654ICP4
      Conserved Domains (1) summary
      pfam00029
      Location:2 → 255
      Connexin

    2. XM_005220850.5 → XP_005220907.1  gap junction gamma-1 protein isoform X1

      See identical proteins and their annotated locations for XP_005220907.1

      UniProtKB/Swiss-Prot
      Q2HJ66
      UniProtKB/TrEMBL
      A0A654ICP4
      Related
      ENSBTAP00000079830.1, ENSBTAT00000087603.1
      Conserved Domains (1) summary
      pfam00029
      Location:2 → 255
      Connexin

    3. XM_015458865.3 → XP_015314351.1  gap junction gamma-1 protein isoform X1

      UniProtKB/Swiss-Prot
      Q2HJ66
      UniProtKB/TrEMBL
      A0A654ICP4
      Related
      ENSBTAP00000095723.1, ENSBTAT00000126929.1
      Conserved Domains (1) summary
      pfam00029
      Location:2 → 255
      Connexin
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2HJ66.1 GenPept UniProtKB/Swiss-Prot:Q2HJ66

    Gene LinkOut

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