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    PERM1 PPARGC1 and ESRR induced regulator, muscle 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 520080, updated on 30-Jan-2025

    Summary

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    Official Symbol
    PERM1provided by VGNC
    Official Full Name
    PPARGC1 and ESRR induced regulator, muscle 1provided by VGNC
    Primary source
    VGNC:VGNC:32749
    See related
    EnsemblRapid:ENSBTAG00070020524
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    C1orf170; C16H1orf170
    Orthologs
    human mouse all
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    Genomic context

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    See PERM1 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 16 NC_037343.1 (51493170..51498783)

    Chromosome 16 - NC_037343.1Genomic Context describing neighboring genes Neighboring gene ISG15 ubiquitin like modifier Neighboring gene hes family bHLH transcription factor 4 Neighboring gene pleckstrin homology domain containing N1 Neighboring gene kelch like family member 17 Neighboring gene NOC2 like nucleolar associated transcriptional repressor Neighboring gene sterile alpha motif domain containing 11

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037343.1 Chromosome 16 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC155319

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to muscle activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PGC-1 and ERR-induced regulator in muscle protein 1
    Names
    PPARGC1 and ESRR-induced regulator in muscle 1
    peroxisome proliferator-activated receptor gamma coactivator 1 and estrogen-related receptor-induced regulator in muscle 1
    uncharacterized protein C1orf170 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001098048.1 → NP_001091517.1  PGC-1 and ERR-induced regulator in muscle protein 1

      See identical proteins and their annotated locations for NP_001091517.1

      Status: PROVISIONAL

      Source sequence(s)
      BC140606
      UniProtKB/Swiss-Prot
      A5D7L8
      UniProtKB/TrEMBL
      A0AAA9S9Q6
      Related
      ENSBTAP00070027788.1, ENSBTAT00070046324.1
      Conserved Domains (1) summary
      PHA03247
      Location:38 → 471
      PHA03247; large tegument protein UL36; Provisional

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037343.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      51493170..51498783
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015475149.3 → XP_015330635.1  PGC-1 and ERR-induced regulator in muscle protein 1 isoform X1

      UniProtKB/Swiss-Prot
      A5D7L8
      UniProtKB/TrEMBL
      A0AAA9S9Q6
      Conserved Domains (1) summary
      PHA03247
      Location:38 → 471
      PHA03247; large tegument protein UL36; Provisional

    2. XM_005217090.5 → XP_005217147.1  PGC-1 and ERR-induced regulator in muscle protein 1 isoform X1

      See identical proteins and their annotated locations for XP_005217147.1

      UniProtKB/Swiss-Prot
      A5D7L8
      UniProtKB/TrEMBL
      A0AAA9S9Q6
      Conserved Domains (1) summary
      PHA03247
      Location:38 → 471
      PHA03247; large tegument protein UL36; Provisional
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A5D7L8.1 GenPept UniProtKB/Swiss-Prot:A5D7L8

    Gene LinkOut

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