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    CDH23 cadherin related 23 [ Bos taurus (domestic cattle) ]

    Gene ID: 784716, updated on 30-Jan-2025

    Summary

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    Official Symbol
    CDH23provided by VGNC
    Official Full Name
    cadherin related 23provided by VGNC
    Primary source
    VGNC:VGNC:107305
    See related
    BGD:BT29251; EnsemblRapid:ENSBTAG00070028021
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See CDH23 in Genome Data Viewer
    Location:
    chromosome: 28
    Exon count:
    75
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 28 NC_037355.1 (27503563..27963944)

    Chromosome 28 - NC_037355.1Genomic Context describing neighboring genes Neighboring gene transfer RNA arginine (anticodon GCG) Neighboring gene solute carrier family 29 member 3 Neighboring gene chromosome 28 C10orf105 homolog Neighboring gene V-set immunoregulatory receptor Neighboring gene prosaposin Neighboring gene uncharacterized LOC132344156 Neighboring gene carbohydrate sulfotransferase 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037355.1 Chromosome 28 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cadherin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of catenin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cell-cell junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cadherin-23
    Names
    cadherin-like 23

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001191206.3 → NP_001178135.2  cadherin-23 precursor

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000028
      UniProtKB/TrEMBL
      F1MXP9
      Related
      ENSBTAP00070038516.1, ENSBTAT00070064116.1
      Conserved Domains (1) summary
      cd11304
      Location:1533 → 1630
      Cadherin_repeat; Cadherin tandem repeat domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037355.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      27503563..27963944
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059882631.1 → XP_059738614.1  cadherin-23 isoform X9

      UniProtKB/TrEMBL
      A0AAA9SIR4
      Related
      ENSBTAP00070038365.1, ENSBTAT00070063906.1

    2. XM_059882625.1 → XP_059738608.1  cadherin-23 isoform X5

    3. XM_059882626.1 → XP_059738609.1  cadherin-23 isoform X6

    4. XM_059882624.1 → XP_059738607.1  cadherin-23 isoform X5

    5. XM_059882628.1 → XP_059738611.1  cadherin-23 isoform X6

    6. XM_059882627.1 → XP_059738610.1  cadherin-23 isoform X7

    7. XM_059882629.1 → XP_059738612.1  cadherin-23 isoform X8

    8. XM_059882622.1 → XP_059738605.1  cadherin-23 isoform X3

    9. XM_059882623.1 → XP_059738606.1  cadherin-23 isoform X4

    10. XM_059882621.1 → XP_059738604.1  cadherin-23 isoform X1

    11. XM_024986798.2 → XP_024842566.2  cadherin-23 isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version

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