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    XRRA1 X-ray radiation resistance associated 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 369019, updated on 30-Jan-2025

    Summary

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    Official Symbol
    XRRA1provided by VGNC
    Official Full Name
    X-ray radiation resistance associated 1provided by VGNC
    Primary source
    VGNC:VGNC:37010
    See related
    EnsemblRapid:ENSBTAG00070031563
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See XRRA1 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 15 NC_037342.1 (54155463..54223143, complement)

    Chromosome 15 - NC_037342.1Genomic Context describing neighboring genes Neighboring gene ring finger protein 169 Neighboring gene glyoxalase domain-containing protein 4-like Neighboring gene small nucleolar RNA SNORA57 Neighboring gene signal peptidase complex subunit 2 Neighboring gene neuraminidase 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037342.1 Chromosome 15 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Molecular cloning, genomic characterization and over-expression of a novel gene, XRRA1, identified from human colorectal cancer cell HCT116Clone2_XRR and macaque testis. Mesak FM, et al. BMC Genomics, 2003 Aug 9. PMID 12908878, Free PMC Article
    2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    X-ray radiation resistance-associated protein 1
    Names
    X-ray radiation resistance associated 1 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001434771.1 → NP_001421700.1  X-ray radiation resistance-associated protein 1

      Status: VALIDATED

      Source sequence(s)
      NKLS02000015
      UniProtKB/TrEMBL
      E1BMB0
      Related
      ENSBTAP00070043695.1, ENSBTAT00070071583.1

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037342.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      54155463..54223143 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005216246.5 → XP_005216303.1  X-ray radiation resistance-associated protein 1 isoform X4

      UniProtKB/TrEMBL
      E1BMB0
      Conserved Domains (4) summary
      cd00116
      Location:56 → 187
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:64 → 86
      LRR_RI; leucine-rich repeat [structural motif]
      pfam12799
      Location:85 → 126
      LRR_4; Leucine Rich repeats (2 copies)
      pfam13855
      Location:109 → 187
      LRR_8; Leucine rich repeat

    2. XM_005216243.5 → XP_005216300.1  X-ray radiation resistance-associated protein 1 isoform X2

      UniProtKB/TrEMBL
      E1BMB0
      Related
      ENSBTAP00070043645.1, ENSBTAT00070071504.1
      Conserved Domains (4) summary
      cd00116
      Location:141 → 272
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:149 → 171
      LRR_RI; leucine-rich repeat [structural motif]
      pfam12799
      Location:170 → 211
      LRR_4; Leucine Rich repeats (2 copies)
      pfam13855
      Location:194 → 272
      LRR_8; Leucine rich repeat

    3. XM_024975034.2 → XP_024830802.1  X-ray radiation resistance-associated protein 1 isoform X3

      UniProtKB/TrEMBL
      E1BMB0, F1MD61
      Related
      ENSBTAP00070043663.1, ENSBTAT00070071534.1
      Conserved Domains (3) summary
      sd00031
      Location:166 → 190
      LRR_1; leucine-rich repeat [structural motif]
      pfam13855
      Location:164 → 201
      LRR_8; Leucine rich repeat
      cl25751
      Location:382 → 678
      DUF4045; Domain of unknown function (DUF4045)

    4. XM_010812691.4 → XP_010810993.1  X-ray radiation resistance-associated protein 1 isoform X5

      See identical proteins and their annotated locations for XP_010810993.1

      UniProtKB/TrEMBL
      A0AAA9SC64
      Related
      ENSBTAP00070043570.1, ENSBTAT00070071391.1
      Conserved Domains (1) summary
      PTZ00449
      Location:213 → 509
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional

    5. XM_059874583.1 → XP_059730566.1  X-ray radiation resistance-associated protein 1 isoform X6

      UniProtKB/TrEMBL
      A0AAA9SC64

    6. XM_024975033.2 → XP_024830801.2  X-ray radiation resistance-associated protein 1 isoform X7

      UniProtKB/TrEMBL
      A0AAA9SC64

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_203324.1: Suppressed sequence

      Description
      NM_203324.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7PCK7.2 GenPept UniProtKB/Swiss-Prot:Q7PCK7

    Gene LinkOut

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