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    HDAC7 histone deacetylase 7 [ Bos taurus (domestic cattle) ]

    Gene ID: 509843, updated on 30-Jan-2025

    Summary

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    Official Symbol
    HDAC7provided by VGNC
    Official Full Name
    histone deacetylase 7provided by VGNC
    Primary source
    VGNC:VGNC:49060
    See related
    BGD:BT24293; EnsemblRapid:ENSBTAG00070005143
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See HDAC7 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    35
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 5 NC_037332.1 (32462215..32499017)

    Chromosome 5 - NC_037332.1Genomic Context describing neighboring genes Neighboring gene large ribosomal subunit protein eL22-like Neighboring gene vitamin D receptor Neighboring gene uncharacterized LOC101905666 Neighboring gene solute carrier family 48 member 1 Neighboring gene Rap guanine nucleotide exchange factor 3 Neighboring gene uncharacterized protein C11orf98-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037332.1 Chromosome 5 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone deacetylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription factor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of histone deacetylase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    histone deacetylase 7
    NP_001180070.1
    XP_005206426.2
    XP_005206429.1
    XP_005206430.1
    XP_005206431.1
    XP_010803340.2
    XP_010803341.1
    XP_024847348.1
    XP_024847349.1
    XP_059742237.1
    XP_059742238.1
    XP_059742239.1
    XP_059742240.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001193141.3 → NP_001180070.1  histone deacetylase 7

      See identical proteins and their annotated locations for NP_001180070.1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000005
      UniProtKB/TrEMBL
      A0A3Q1NGD6, F1N616
      Related
      ENSBTAP00070006654.1, ENSBTAT00070011795.1
      Conserved Domains (1) summary
      cd10008
      Location:554 → 931
      HDAC7; Histone deacetylase 7

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037332.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      32462215..32499017
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005206369.3 → XP_005206426.2  histone deacetylase 7 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1N0A4
      Conserved Domains (2) summary
      cd10008
      Location:642 → 1019
      HDAC7; Histone deacetylase 7
      cl26464
      Location:228 → 625
      Atrophin-1; Atrophin-1 family

    2. XM_010805038.3 → XP_010803340.2  histone deacetylase 7 isoform X2

      UniProtKB/TrEMBL
      A0A3Q1N0A4
      Conserved Domains (2) summary
      cd10008
      Location:610 → 987
      HDAC7; Histone deacetylase 7
      cl26464
      Location:91 → 513
      Atrophin-1; Atrophin-1 family

    3. XM_005206372.5 → XP_005206429.1  histone deacetylase 7 isoform X4

      UniProtKB/TrEMBL
      A0A3Q1MDB6, A0A3Q1NGD6
      Related
      ENSBTAP00070006668.1, ENSBTAT00070011809.1
      Conserved Domains (1) summary
      cd10008
      Location:561 → 938
      HDAC7; Histone deacetylase 7

    4. XM_005206374.5 → XP_005206431.1  histone deacetylase 7 isoform X6

      UniProtKB/TrEMBL
      A0A3Q1NGD6, A0AAA9T6A2
      Related
      ENSBTAP00070006658.1, ENSBTAT00070011799.1
      Conserved Domains (1) summary
      cd10008
      Location:552 → 929
      HDAC7; Histone deacetylase 7

    5. XM_024991580.2 → XP_024847348.1  histone deacetylase 7 isoform X7

      UniProtKB/TrEMBL
      A0AAA9TGJ2
      Related
      ENSBTAP00070006660.1, ENSBTAT00070011801.1
      Conserved Domains (2) summary
      cd10008
      Location:520 → 897
      HDAC7; Histone deacetylase 7
      cl25751
      Location:78 → 441
      DUF4045; Domain of unknown function (DUF4045)

    6. XM_059886256.1 → XP_059742239.1  histone deacetylase 7 isoform X9

      UniProtKB/TrEMBL
      A0A3Q1MDL2

    7. XM_010805039.4 → XP_010803341.1  histone deacetylase 7 isoform X8

      UniProtKB/TrEMBL
      A0A3Q1MDL2
      Conserved Domains (2) summary
      cd10008
      Location:513 → 890
      HDAC7; Histone deacetylase 7
      cl26464
      Location:99 → 496
      Atrophin-1; Atrophin-1 family

    8. XM_059886257.1 → XP_059742240.1  histone deacetylase 7 isoform X8

      UniProtKB/TrEMBL
      A0A3Q1MDL2

    9. XM_059886254.1 → XP_059742237.1  histone deacetylase 7 isoform X3

      UniProtKB/TrEMBL
      A0A3Q1NGD6

    10. XM_024991581.2 → XP_024847349.1  histone deacetylase 7 isoform X8

      UniProtKB/TrEMBL
      A0A3Q1MDL2
      Conserved Domains (2) summary
      cd10008
      Location:513 → 890
      HDAC7; Histone deacetylase 7
      cl26464
      Location:99 → 496
      Atrophin-1; Atrophin-1 family

    11. XM_005206373.5 → XP_005206430.1  histone deacetylase 7 isoform X5

      UniProtKB/TrEMBL
      A0A3Q1NGD6
      Conserved Domains (1) summary
      cd10008
      Location:556 → 933
      HDAC7; Histone deacetylase 7

    12. XM_059886255.1 → XP_059742238.1  histone deacetylase 7 isoform X8

      UniProtKB/TrEMBL
      A0A3Q1MDL2

    RNA

    1. XR_806635.4 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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