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    SUSD4 sushi domain containing 4 [ Bos taurus (domestic cattle) ]

    Gene ID: 508637, updated on 30-Jan-2025

    Summary

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    Official Symbol
    SUSD4provided by VGNC
    Official Full Name
    sushi domain containing 4provided by VGNC
    Primary source
    VGNC:VGNC:35489
    See related
    BGD:BT22336; EnsemblRapid:ENSBTAG00070009911
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See SUSD4 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 16 NC_037343.1 (26686324..26820039, complement)

    Chromosome 16 - NC_037343.1Genomic Context describing neighboring genes Neighboring gene AU RNA binding protein/enoyl-CoA hydratase pseudogene Neighboring gene dispatched RND transporter family member 1 Neighboring gene toll like receptor 5 Neighboring gene coiled-coil domain containing 185 Neighboring gene uncharacterized LOC132342448

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037343.1 Chromosome 16 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC143199

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in negative regulation of complement activation, alternative pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of complement activation, classical pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sushi domain-containing protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001101904.1 → NP_001095374.1  sushi domain-containing protein 4

      See identical proteins and their annotated locations for NP_001095374.1

      Status: PROVISIONAL

      Source sequence(s)
      BC148046
      UniProtKB/TrEMBL
      A6QLQ2, F1MBG4
      Related
      ENSBTAP00070013096.1, ENSBTAT00070022251.1
      Conserved Domains (2) summary
      cd00033
      Location:180 → 237
      CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
      smart00032
      Location:243 → 297
      CCP; Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR)

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037343.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      26686324..26820039 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024976149.2 → XP_024831917.1  sushi domain-containing protein 4 isoform X1

      UniProtKB/TrEMBL
      F1MBG4
      Conserved Domains (2) summary
      smart00032
      Location:245 → 299
      CCP; Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR)
      cl27761
      Location:30 → 238
      CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system

    2. XM_024976150.2 → XP_024831918.1  sushi domain-containing protein 4 isoform X2

      UniProtKB/TrEMBL
      F1MBG4
      Conserved Domains (2) summary
      cd00033
      Location:109 → 166
      CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
      smart00032
      Location:174 → 228
      CCP; Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR)

    3. XM_024976147.2 → XP_024831915.1  sushi domain-containing protein 4 isoform X1

      UniProtKB/TrEMBL
      F1MBG4
      Conserved Domains (2) summary
      smart00032
      Location:245 → 299
      CCP; Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR)
      cl27761
      Location:30 → 238
      CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system

    4. XM_005216804.5 → XP_005216861.1  sushi domain-containing protein 4 isoform X1

      See identical proteins and their annotated locations for XP_005216861.1

      UniProtKB/TrEMBL
      F1MBG4
      Conserved Domains (2) summary
      smart00032
      Location:245 → 299
      CCP; Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR)
      cl27761
      Location:30 → 238
      CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system

    5. XM_024976148.2 → XP_024831916.1  sushi domain-containing protein 4 isoform X1

      UniProtKB/TrEMBL
      F1MBG4
      Conserved Domains (2) summary
      smart00032
      Location:245 → 299
      CCP; Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR)
      cl27761
      Location:30 → 238
      CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system

    6. XM_059875322.1 → XP_059731305.1  sushi domain-containing protein 4 isoform X3

    Nucleotide Protein Strain
    Heading Accession and Version

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