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    AUP1 AUP1 lipid droplet regulating VLDL assembly factor [ Bos taurus (domestic cattle) ]

    Gene ID: 509130, updated on 30-Jan-2025

    Summary

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    Official Symbol
    AUP1provided by VGNC
    Official Full Name
    AUP1 lipid droplet regulating VLDL assembly factorprovided by VGNC
    Primary source
    VGNC:VGNC:26348
    See related
    BGD:BT14463; EnsemblRapid:ENSBTAG00070008209
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
    NEW
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    Genomic context

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    See AUP1 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 11 NC_037338.1 (10110568..10113601)

    Chromosome 11 - NC_037338.1Genomic Context describing neighboring genes Neighboring gene docking protein 1 Neighboring gene lysyl oxidase like 3 Neighboring gene HtrA serine peptidase 2 Neighboring gene DEAQ-box RNA dependent ATPase 1 Neighboring gene T cell leukemia homeobox 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037338.1 Chromosome 11 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Analysis of bovine mammary gland EST and functional annotation of the Bos taurus gene index. Sonstegard TS, et al. Mamm Genome, 2002 Jul. PMID 12140684
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lipid droplet-regulating VLDL assembly factor AUP1
    Names
    ancient ubiquitous protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001015555.1 → NP_001015555.1  lipid droplet-regulating VLDL assembly factor AUP1

      See identical proteins and their annotated locations for NP_001015555.1

      Status: PROVISIONAL

      Source sequence(s)
      BT021065
      UniProtKB/TrEMBL
      F6QD17, Q5E955
      Related
      ENSBTAP00070010850.1, ENSBTAT00070018506.1
      Conserved Domains (2) summary
      cd14420
      Location:296 → 340
      CUE_AUP1; CUE domain found in ancient ubiquitous protein 1 (AUP1) and similar proteins
      cl17185
      Location:66 → 264
      LPLAT; Lysophospholipid acyltransferases (LPLATs) of glycerophospholipid biosynthesis

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037338.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      10110568..10113601
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059891144.1 → XP_059747127.1  lipid droplet-regulating VLDL assembly factor AUP1 isoform X1

      UniProtKB/TrEMBL
      A0AAA9T820, F6QD17

    2. XM_059891145.1 → XP_059747128.1  lipid droplet-regulating VLDL assembly factor AUP1 isoform X2

      UniProtKB/TrEMBL
      F6QD17

    3. XM_059891146.1 → XP_059747129.1  lipid droplet-regulating VLDL assembly factor AUP1 isoform X3

      UniProtKB/TrEMBL
      F6QD17
    Nucleotide Protein Strain
    Heading Accession and Version

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