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    BTF3 basic transcription factor 3 [ Bos taurus (domestic cattle) ]

    Gene ID: 281031, updated on 30-Jan-2025

    Summary

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    Official Symbol
    BTF3provided by VGNC
    Official Full Name
    basic transcription factor 3provided by VGNC
    Primary source
    VGNC:VGNC:26595
    See related
    BGD:BT25647; EnsemblRapid:ENSBTAG00070017315
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See BTF3 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 20 NC_037347.1 (8116596..8123283, complement)

    Chromosome 20 - NC_037347.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat family A member 2 Neighboring gene ATP synthase subunit f, mitochondrial Neighboring gene calmodulin-like Neighboring gene forkhead box D1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037347.1 Chromosome 20 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Comparative analysis of 82 expressed sequence tags from a cattle ovary cDNA library. Ma RZ, et al. Mamm Genome, 1998 Jul. PMID 9657852
    2. Characterization of gene expression profiles in early bovine pregnancy using a custom cDNA microarray. Ishiwata H, et al. Mol Reprod Dev, 2003 May. PMID 12658628
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC128310

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of nascent polypeptide-associated complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor BTF3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001025314.2 → NP_001020485.1  transcription factor BTF3

      See identical proteins and their annotated locations for NP_001020485.1

      Status: PROVISIONAL

      Source sequence(s)
      AY911339
      UniProtKB/TrEMBL
      Q3SZB6, Q56JY8
      Conserved Domains (1) summary
      cd22055
      Location:9 → 125
      NAC_BTF3; basal transcription factor BTF3

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037347.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      8116596..8123283 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005221405.5 → XP_005221462.1  transcription factor BTF3 isoform X2

      See identical proteins and their annotated locations for XP_005221462.1

      Conserved Domains (1) summary
      pfam01849
      Location:1 → 33
      NAC; NAC domain

    2. XM_005221404.5 → XP_005221461.1  transcription factor BTF3 isoform X1

      See identical proteins and their annotated locations for XP_005221461.1

      UniProtKB/TrEMBL
      F6PWU2
      Related
      ENSBTAP00070023175.1, ENSBTAT00070039049.1
      Conserved Domains (1) summary
      cd22055
      Location:53 → 169
      NAC_BTF3; basal transcription factor BTF3
    Nucleotide Protein Strain
    Heading Accession and Version

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