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    POLR2D RNA polymerase II subunit D [ Bos taurus (domestic cattle) ]

    Gene ID: 617422, updated on 30-Jan-2025

    Summary

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    Official Symbol
    POLR2Dprovided by VGNC
    Official Full Name
    RNA polymerase II subunit Dprovided by VGNC
    Primary source
    VGNC:VGNC:33138
    See related
    BGD:BT12260; EnsemblRapid:ENSBTAG00070002293
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See POLR2D in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 2 NC_037329.1 (4623450..4635167)

    Chromosome 2 - NC_037329.1Genomic Context describing neighboring genes Neighboring gene Sin3A associated protein 130 Neighboring gene AMMECR1 like Neighboring gene WD repeat domain 33 Neighboring gene SFT2 domain containing 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037329.1 Chromosome 2 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Identification of DNA replication and cell cycle proteins that interact with PCNA. Loor G, et al. Nucleic Acids Res, 1997 Dec 15. PMID 9396813, Free PMC Article
    2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Clone Names

    • MGC140544

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables translation initiation factor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transcription initiation at RNA polymerase II promoter IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RNA polymerase II, core complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA-directed RNA polymerase II subunit RPB4
    Names
    DNA-directed RNA polymerase II subunit D
    RNA polymerase II polypeptide D
    RNA polymerase II subunit B4
    polymerase (RNA) II (DNA directed) polypeptide D
    NP_001069926.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001076458.2 → NP_001069926.1  DNA-directed RNA polymerase II subunit RPB4

      Status: PROVISIONAL

      Source sequence(s)
      BC116155
      UniProtKB/Swiss-Prot
      Q1JQ91
      Related
      ENSBTAP00070003006.1, ENSBTAT00070005285.1
      Conserved Domains (1) summary
      smart00657
      Location:24 → 141
      RPOL4c; DNA-directed RNA-polymerase II subunit

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037329.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      4623450..4635167
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q1JQ91.1 GenPept UniProtKB/Swiss-Prot:Q1JQ91

    Gene LinkOut

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