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    TSC22D1 TSC22 domain family member 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 510359, updated on 30-Jan-2025

    Summary

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    Gene symbol
    TSC22D1
    Gene description
    TSC22 domain family member 1
    See related
    BGD:BT23781; EnsemblRapid:ENSBTAG00070027160 EnsemblRapid:ENSBTAG00070028410
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See TSC22D1 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 12 NC_037339.1 (14678163..14801590, complement)

    Chromosome 12 - NC_037339.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112449035 Neighboring gene stress associated endoplasmic reticulum protein family member 2 Neighboring gene collagen alpha-1(I) chain Neighboring gene uncharacterized LOC107132988 Neighboring gene transfer RNA cysteine (anticodon ACA)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037339.1 Chromosome 12 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC128409

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in negative regulation of apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of cell population proliferation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    TSC22 domain family protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001034377.2 → NP_001029549.1  TSC22 domain family protein 1

      See identical proteins and their annotated locations for NP_001029549.1

      Status: VALIDATED

      Source sequence(s)
      BC105192
      UniProtKB/Swiss-Prot
      Q3MHL6
      Related
      ENSBTAP00070036640.1, ENSBTAT00070061586.1
      Conserved Domains (1) summary
      cd21938
      Location:54 → 132
      ZIP_TSC22D1; leucine zipper domain found in TSC22 domain family protein 1

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037339.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      14678163..14801590 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024999842.1 → XP_024855610.1  TSC22 domain family protein 1 isoform X9

      Conserved Domains (1) summary
      cl40461
      Location:1 → 74
      ZIP_TSC22D-like; leucine zipper found in the TSC22 domain leucine zipper transcription factors, c-Myc-binding protein, and similar proteins

    2. XM_005213604.5 → XP_005213661.1  TSC22 domain family protein 1 isoform X1

      Conserved Domains (1) summary
      pfam01166
      Location:969 → 1015
      TSC22; TSC-22/dip/bun family

    3. XM_005213606.5 → XP_005213663.1  TSC22 domain family protein 1 isoform X6

      Conserved Domains (1) summary
      pfam01166
      Location:848 → 894
      TSC22; TSC-22/dip/bun family

    4. XM_005213608.5 → XP_005213665.1  TSC22 domain family protein 1 isoform X9

      See identical proteins and their annotated locations for XP_005213665.1

      Conserved Domains (1) summary
      cl40461
      Location:1 → 74
      ZIP_TSC22D-like; leucine zipper found in the TSC22 domain leucine zipper transcription factors, c-Myc-binding protein, and similar proteins

    5. XM_010810695.4 → XP_010808997.1  TSC22 domain family protein 1 isoform X7

      See identical proteins and their annotated locations for XP_010808997.1

      Conserved Domains (1) summary
      PHA03247
      Location:486 → 804
      PHA03247; large tegument protein UL36; Provisional

    6. XM_010810690.4 → XP_010808992.1  TSC22 domain family protein 1 isoform X2

      See identical proteins and their annotated locations for XP_010808992.1

      UniProtKB/TrEMBL
      F1N4X3
      Related
      ENSBTAP00070038843.1, ENSBTAT00070064605.1
      Conserved Domains (1) summary
      PHA03247
      Location:486 → 810
      PHA03247; large tegument protein UL36; Provisional

    7. XM_010810691.4 → XP_010808993.1  TSC22 domain family protein 1 isoform X3

      See identical proteins and their annotated locations for XP_010808993.1

      Conserved Domains (1) summary
      PHA03247
      Location:486 → 810
      PHA03247; large tegument protein UL36; Provisional

    8. XM_010810692.4 → XP_010808994.1  TSC22 domain family protein 1 isoform X4

      See identical proteins and their annotated locations for XP_010808994.1

      Conserved Domains (1) summary
      cl26464
      Location:486 → 810
      Atrophin-1; Atrophin-1 family

    9. XM_059892020.1 → XP_059748003.1  TSC22 domain family protein 1 isoform X8

    10. XM_059892019.1 → XP_059748002.1  TSC22 domain family protein 1 isoform X5

      Related
      ENSBTAP00070038826.1, ENSBTAT00070064585.1

    RNA

    1. XR_003037432.2 RNA Sequence

    2. XR_810103.4 RNA Sequence

    3. XR_810104.4 RNA Sequence

    4. XR_236611.5 RNA Sequence

    5. XR_003037431.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3MHL6.1 GenPept UniProtKB/Swiss-Prot:Q3MHL6

    Gene LinkOut

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