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    RPS4Y1 ribosomal protein S4, Y-linked 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 286873, updated on 27-Dec-2024

    Summary

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    Gene symbol
    RPS4Y1
    Gene description
    ribosomal protein S4, Y-linked 1
    See related
    BGD:BT14231; Ensembl:ENSBTAG00000025617
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    RPS4
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    Genomic context

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    See RPS4Y1 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 23 NC_037350.1 (10550055..10565856, complement)

    Chromosome 23 - NC_037350.1Genomic Context describing neighboring genes Neighboring gene protein transport protein Sec61 subunit beta-like Neighboring gene serine and arginine rich splicing factor 3 Neighboring gene cyclin dependent kinase inhibitor 1A Neighboring gene BLOC-1-related complex subunit 8-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037350.1 Chromosome 23 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Relationship between the monosomy X phenotype and Y-linked ribosomal protein S4 (Rps4) in several species of mammals: a molecular evolutionary analysis of Rps4 homologs. Omoe K, et al. Genomics, 1996 Jan 1. PMID 8808278
    2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    40S ribosomal protein S4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001082422.2 → NP_001075891.1  40S ribosomal protein S4

      See identical proteins and their annotated locations for NP_001075891.1

      Status: PROVISIONAL

      Source sequence(s)
      BC133507
      UniProtKB/TrEMBL
      A2VE06, F1MJH2
      Related
      ENSBTAP00000081474.1, ENSBTAT00000114691.1
      Conserved Domains (1) summary
      PLN00036
      Location:1 → 260
      PLN00036; 40S ribosomal protein S4; Provisional

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037350.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      10550055..10565856 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005223309.4 → XP_005223366.1  40S ribosomal protein S4 isoform X1

      See identical proteins and their annotated locations for XP_005223366.1

      UniProtKB/TrEMBL
      A2VE06, F1MJH2
      Conserved Domains (1) summary
      PLN00036
      Location:1 → 260
      PLN00036; 40S ribosomal protein S4; Provisional
    Nucleotide Protein Strain
    Heading Accession and Version

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