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    TRRAP transformation/transcription domain associated protein [ Bos taurus (domestic cattle) ]

    Gene ID: 507169, updated on 1-Jan-2025

    Summary

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    Official Symbol
    TRRAPprovided by VGNC
    Official Full Name
    transformation/transcription domain associated proteinprovided by VGNC
    Primary source
    VGNC:VGNC:36403
    See related
    BGD:BT22144; Ensembl:ENSBTAG00000007113
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See TRRAP in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    73
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 25 NC_037352.1 (37265876..37356197, complement)

    Chromosome 25 - NC_037352.1Genomic Context describing neighboring genes Neighboring gene karyopherin subunit alpha 7 Neighboring gene SMAD specific E3 ubiquitin protein ligase 1 Neighboring gene small nucleolar RNA ZL1 Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene transmembrane protein 130 Neighboring gene uncharacterized LOC132343876

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037352.1 Chromosome 25 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of NuA4 histone acetyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of SAGA complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transformation/transcription domain-associated protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001192137.4 → NP_001179066.1  transformation/transcription domain-associated protein isoform 3

      Status: VALIDATED

      Source sequence(s)
      GGUZ01094053, NKLS02000025
      UniProtKB/TrEMBL
      E1BKJ5
      Related
      ENSBTAP00000009365.6, ENSBTAT00000009365.7
      Conserved Domains (3) summary
      cd05163
      Location:3468 → 3755
      PIKK_TRRAP; Pseudokinase domain of TRansformation/tRanscription domain-Associated Protein
      pfam02259
      Location:2834 → 3176
      FAT; FAT domain
      pfam02260
      Location:3804 → 3831
      FATC; FATC domain

    2. NM_001434938.1 → NP_001421867.1  transformation/transcription domain-associated protein isoform 1

      Status: VALIDATED

      Source sequence(s)
      GGUZ01094053, NKLS02000025

    3. NM_001434939.1 → NP_001421868.1  transformation/transcription domain-associated protein isoform 2

      Status: VALIDATED

      Source sequence(s)
      GGUZ01094053, NKLS02000025

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037352.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      37265876..37356197 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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