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    AP4S1 adaptor related protein complex 4 sigma 1 subunit [ Gallus gallus (chicken) ]

    Gene ID: 423309, updated on 17-Aug-2024

    Summary

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    Symbol
    AP4S1provided by CGNC
    Full Name
    adaptor related protein complex 4 sigma 1 subunitprovided by CGNC
    Primary source
    CGNC:7548
    See related
    Ensembl:ENSGALG00010005535
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See AP4S1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 5 NC_052536.1 (33823269..33839759)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 5 NC_052577.1 (33797463..33813939)

    Chromosome 5 - NC_052536.1Genomic Context describing neighboring genes Neighboring gene sec1 family domain containing 1 Neighboring gene cochlin Neighboring gene striatin 3 Neighboring gene HECT domain E3 ubiquitin protein ligase 1 Neighboring gene uncharacterized LOC107053511 Neighboring gene HEAT repeat containing 5A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AP-4 complex subunit sigma-1
    Names
    adaptor related protein complex 4 subunit sigma 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052536.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      33823269..33839759
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046942486.1 → XP_046798442.1  AP-4 complex subunit sigma-1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XPJ4

    2. XM_015287637.4 → XP_015143123.2  AP-4 complex subunit sigma-1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XPJ4
      Related
      ENSGALP00010007803.1, ENSGALT00010013241.1
      Conserved Domains (1) summary
      cd14832
      Location:3 → 140
      AP4_sigma; AP-4 complex subunit sigma

    3. XM_015287638.4 → XP_015143124.2  AP-4 complex subunit sigma-1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XPJ4
      Conserved Domains (1) summary
      cd14832
      Location:3 → 140
      AP4_sigma; AP-4 complex subunit sigma

    4. XM_040702179.2 → XP_040558113.1  AP-4 complex subunit sigma-1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0XI28
      Related
      ENSGALP00010007806.1, ENSGALT00010013244.1
      Conserved Domains (1) summary
      cl38905
      Location:3 → 98
      longin-like; Longin-like domains

    5. XM_040702175.2 → XP_040558109.1  AP-4 complex subunit sigma-1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XPJ4
      Conserved Domains (1) summary
      cd14832
      Location:3 → 140
      AP4_sigma; AP-4 complex subunit sigma

    6. XM_040702176.2 → XP_040558110.1  AP-4 complex subunit sigma-1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XPJ4
      Conserved Domains (1) summary
      cd14832
      Location:3 → 140
      AP4_sigma; AP-4 complex subunit sigma

    7. XM_421226.8 → XP_421226.3  AP-4 complex subunit sigma-1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XPJ4
      Conserved Domains (1) summary
      cd14832
      Location:3 → 140
      AP4_sigma; AP-4 complex subunit sigma

    8. XM_040702174.2 → XP_040558108.1  AP-4 complex subunit sigma-1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XPJ4
      Conserved Domains (1) summary
      cd14832
      Location:3 → 140
      AP4_sigma; AP-4 complex subunit sigma

    9. XM_040702178.2 → XP_040558112.1  AP-4 complex subunit sigma-1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0XI28
      Conserved Domains (1) summary
      cl38905
      Location:3 → 98
      longin-like; Longin-like domains

    10. XM_040702180.2 → XP_040558114.1  AP-4 complex subunit sigma-1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0XI28
      Conserved Domains (1) summary
      cl38905
      Location:3 → 98
      longin-like; Longin-like domains

    11. XM_040702177.1 → XP_040558111.1  AP-4 complex subunit sigma-1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XPJ4
      Conserved Domains (1) summary
      cd14832
      Location:3 → 140
      AP4_sigma; AP-4 complex subunit sigma

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052577.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      33797463..33813939
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040674031.2 → XP_040529965.1  AP-4 complex subunit sigma-1 isoform X1

      Conserved Domains (1) summary
      cd14832
      Location:3 → 140
      AP4_sigma; AP-4 complex subunit sigma

    2. XM_040674025.2 → XP_040529959.1  AP-4 complex subunit sigma-1 isoform X1

      Conserved Domains (1) summary
      cd14832
      Location:3 → 140
      AP4_sigma; AP-4 complex subunit sigma

    3. XM_040674028.2 → XP_040529962.1  AP-4 complex subunit sigma-1 isoform X2

      Conserved Domains (1) summary
      cl38905
      Location:3 → 98
      longin-like; Longin-like domains

    4. XM_046919510.1 → XP_046775466.1  AP-4 complex subunit sigma-1 isoform X1

    5. XM_040674024.2 → XP_040529958.1  AP-4 complex subunit sigma-1 isoform X1

      Conserved Domains (1) summary
      cd14832
      Location:3 → 140
      AP4_sigma; AP-4 complex subunit sigma

    6. XM_040674030.2 → XP_040529964.1  AP-4 complex subunit sigma-1 isoform X1

      Conserved Domains (1) summary
      cd14832
      Location:3 → 140
      AP4_sigma; AP-4 complex subunit sigma

    7. XM_040674022.2 → XP_040529956.1  AP-4 complex subunit sigma-1 isoform X1

      Conserved Domains (1) summary
      cd14832
      Location:3 → 140
      AP4_sigma; AP-4 complex subunit sigma

    8. XM_040674027.2 → XP_040529961.1  AP-4 complex subunit sigma-1 isoform X2

      Conserved Domains (1) summary
      cl38905
      Location:3 → 98
      longin-like; Longin-like domains

    9. XM_040674029.2 → XP_040529963.1  AP-4 complex subunit sigma-1 isoform X2

      Conserved Domains (1) summary
      cl38905
      Location:3 → 98
      longin-like; Longin-like domains

    10. XM_040674026.1 → XP_040529960.1  AP-4 complex subunit sigma-1 isoform X1

      Conserved Domains (1) summary
      cd14832
      Location:3 → 140
      AP4_sigma; AP-4 complex subunit sigma
    Nucleotide Protein Strain
    Heading Accession and Version

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