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    PDCD6 programmed cell death 6 [ Gallus gallus (chicken) ]

    Gene ID: 420988, updated on 17-Aug-2024

    Summary

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    Symbol
    PDCD6provided by CGNC
    Full Name
    programmed cell death 6provided by CGNC
    Primary source
    CGNC:10082
    See related
    Ensembl:ENSGALG00010008196
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See PDCD6 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (88542340..88549899)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (88610389..88617956)

    Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene dynein axonemal heavy chain 5-like Neighboring gene uncharacterized LOC121110092 Neighboring gene uncharacterized LOC121110093 Neighboring gene dentin sialophosphoprotein-like Neighboring gene exocyst complex component 3 Neighboring gene aryl-hydrocarbon receptor repressor Neighboring gene uncharacterized LOC420992 Neighboring gene chromosome 2 open reading frame, human C9orf30

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. ALG-2 participates in recovery of cells after plasma membrane damage by electroporation and digitonin treatment. la Cour JM, et al. PLoS One, 2018. PMID 30240438, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    programmed cell death protein 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      88542340..88549899
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004935180.5 → XP_004935237.1  programmed cell death protein 6 isoform X1

      UniProtKB/TrEMBL
      F1NHD8
      Related
      ENSGALP00010011150.1, ENSGALT00010019602.1
      Conserved Domains (1) summary
      cd16183
      Location:14 → 178
      EFh_PEF_ALG-2; EF-hand, calcium binding motif, found in apoptosis-linked gene 2 protein (ALG-2) and similar proteins

    2. XM_419075.8 → XP_419075.2  programmed cell death protein 6 isoform X2

      Conserved Domains (1) summary
      cd16183
      Location:14 → 176
      EFh_PEF_ALG-2; EF-hand, calcium binding motif, found in apoptosis-linked gene 2 protein (ALG-2) and similar proteins

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      88610389..88617956
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040665845.2 → XP_040521779.1  programmed cell death protein 6 isoform X1

      UniProtKB/TrEMBL
      F1NHD8
      Conserved Domains (1) summary
      cd16183
      Location:14 → 178
      EFh_PEF_ALG-2; EF-hand, calcium binding motif, found in apoptosis-linked gene 2 protein (ALG-2) and similar proteins

    2. XM_040665846.2 → XP_040521780.1  programmed cell death protein 6 isoform X2

      Conserved Domains (1) summary
      cd16183
      Location:14 → 176
      EFh_PEF_ALG-2; EF-hand, calcium binding motif, found in apoptosis-linked gene 2 protein (ALG-2) and similar proteins
    Nucleotide Protein Strain
    Heading Accession and Version

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