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    ABCA1 ATP binding cassette subfamily A member 1 [ Gallus gallus (chicken) ]

    Gene ID: 373945, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ABCA1provided by CGNC
    Official Full Name
    ATP binding cassette subfamily A member 1provided by CGNC
    Primary source
    CGNC:11502
    See related
    Ensembl:ENSGALG00010014122
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See ABCA1 in Genome Data Viewer
    Location:
    chromosome: Z
    Exon count:
    51
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) Z NC_052572.1 (55410930..55505344, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) Z NC_059536.1 (55410930..55505344, complement)

    Chromosome Z - NC_052572.1Genomic Context describing neighboring genes Neighboring gene pleckstrin and Sec7 domain containing 3 Neighboring gene uncharacterized LOC121108270 Neighboring gene nipsnap homolog 3A Neighboring gene uncharacterized LOC121108511 Neighboring gene uncharacterized LOC121108340

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification and functional analysis of a naturally occurring E89K mutation in the ABCA1 gene of the WHAM chicken. Attie AD, et al. J Lipid Res, 2002 Oct. PMID 12364545
    2. Spontaneous high density lipoprotein deficiency syndrome associated with a Z-linked mutation in chickens. Poernama F, et al. J Lipid Res, 1990 Jun. PMID 2373963
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ABC-type transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables lipid transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lipid transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phospholipid-transporting ATPase ABCA1
    Names
    ATP-binding cassette sub-family A member 1
    ATP-binding cassette, sub-family A (ABC1), member 1
    NP_989476.1
    XP_046761131.1
    XP_046790590.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_204145.3 → NP_989476.1  phospholipid-transporting ATPase ABCA1

      See identical proteins and their annotated locations for NP_989476.1

      Status: PROVISIONAL

      Source sequence(s)
      JAENSK010000095
      UniProtKB/TrEMBL
      A0A8V0YUL4, Q8UVV4
      Related
      ENSGALP00010019955.1, ENSGALT00010033956.1
      Conserved Domains (3) summary
      TIGR01257
      Location:1 → 2235
      rim_protein; retinal-specific rim ABC transporter
      cd03263
      Location:900 → 1119
      ABC_subfamily_A; ATP-binding cassette domain of the lipid transporters, subfamily A
      pfam13732
      Location:2125 → 2217
      DUF4162; Domain of unknown function (DUF4162)

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052572.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      55410930..55505344 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046905175.1 → XP_046761131.1  phospholipid-transporting ATPase ABCA1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0YUL4, Q8UVV4
      Related
      ENSGALP00010019945.1, ENSGALT00010033933.1

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_059536.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      55410930..55505344 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046934634.1 → XP_046790590.1  phospholipid-transporting ATPase ABCA1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0YUL4, Q8UVV4
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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