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    CKAP5 cytoskeleton associated protein 5 [ Gallus gallus (chicken) ]

    Gene ID: 423190, updated on 17-Aug-2024

    Summary

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    Symbol
    CKAP5provided by CGNC
    Full Name
    cytoskeleton associated protein 5provided by CGNC
    Primary source
    CGNC:6310
    See related
    Ensembl:ENSGALG00010022971
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See CKAP5 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    49
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 5 NC_052536.1 (22921956..22968744)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 5 NC_052577.1 (22889484..22936281)

    Chromosome 5 - NC_052536.1Genomic Context describing neighboring genes Neighboring gene C11orf49 homolog Neighboring gene ADP ribosylation factor GTPase activating protein 2 Neighboring gene LDL receptor related protein 4 Neighboring gene small nucleolar RNA SNORD67 Neighboring gene Rho GTPase activating protein 1 Neighboring gene coagulation factor II, thrombin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables microtubule plus end polymerase IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables microtubule plus-end binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in centrosome duplication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in establishment or maintenance of microtubule cytoskeleton polarity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in microtubule polymerization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitotic spindle organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in centrosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in kinetochore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in microtubule plus-end IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in spindle pole IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cytoskeleton-associated protein 5
    Names
    microtubule-associated protein 215

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001199646.2 → NP_001186575.1  cytoskeleton-associated protein 5

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000214
      UniProtKB/TrEMBL
      F1P0Y0
      Conserved Domains (2) summary
      pfam12348
      Location:858 → 1047
      CLASP_N; CLASP N terminal
      sd00044
      Location:904 → 925
      HEAT; HEAT repeat [structural motif]

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052536.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      22921956..22968744
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040700928.2 → XP_040556862.1  cytoskeleton-associated protein 5 isoform X1

      Conserved Domains (1) summary
      PRK14900
      Location:451 → 559
      valS; valyl-tRNA synthetase; Provisional

    2. XM_040700926.2 → XP_040556860.1  cytoskeleton-associated protein 5 isoform X1

      Conserved Domains (1) summary
      PRK14900
      Location:451 → 559
      valS; valyl-tRNA synthetase; Provisional

    3. XM_040700932.2 → XP_040556866.1  cytoskeleton-associated protein 5 isoform X2

      Conserved Domains (1) summary
      PRK14900
      Location:451 → 559
      valS; valyl-tRNA synthetase; Provisional

    4. XM_040700933.2 → XP_040556867.1  cytoskeleton-associated protein 5 isoform X3

      UniProtKB/TrEMBL
      A0A3Q2U985
      Related
      ENSGALP00010033843.1, ENSGALT00010055919.1

    5. XM_040700934.2 → XP_040556868.1  cytoskeleton-associated protein 5 isoform X4

      Conserved Domains (1) summary
      PRK14900
      Location:451 → 559
      valS; valyl-tRNA synthetase; Provisional

    6. XM_015287029.4 → XP_015142515.1  cytoskeleton-associated protein 5 isoform X5

      UniProtKB/TrEMBL
      A0A8V0ZKF2
      Related
      ENSGALP00010033848.1, ENSGALT00010055931.1
      Conserved Domains (2) summary
      pfam12348
      Location:858 → 1047
      CLASP_N; CLASP N terminal
      sd00044
      Location:904 → 925
      HEAT; HEAT repeat [structural motif]

    7. XM_015287033.4 → XP_015142519.1  cytoskeleton-associated protein 5 isoform X6

      UniProtKB/TrEMBL
      F1P0Y0
      Conserved Domains (2) summary
      pfam12348
      Location:858 → 1047
      CLASP_N; CLASP N terminal
      sd00044
      Location:904 → 925
      HEAT; HEAT repeat [structural motif]

    8. XM_040700931.2 → XP_040556865.1  cytoskeleton-associated protein 5 isoform X1

      Conserved Domains (1) summary
      PRK14900
      Location:451 → 559
      valS; valyl-tRNA synthetase; Provisional

    9. XM_040700930.2 → XP_040556864.1  cytoskeleton-associated protein 5 isoform X1

      Conserved Domains (1) summary
      PRK14900
      Location:451 → 559
      valS; valyl-tRNA synthetase; Provisional

    10. XM_046941695.1 → XP_046797651.1  cytoskeleton-associated protein 5 isoform X1

    11. XM_040700927.2 → XP_040556861.1  cytoskeleton-associated protein 5 isoform X1

      Conserved Domains (1) summary
      PRK14900
      Location:451 → 559
      valS; valyl-tRNA synthetase; Provisional

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052577.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      22889484..22936281
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046918373.1 → XP_046774329.1  cytoskeleton-associated protein 5 isoform X1

    2. XM_046918371.1 → XP_046774327.1  cytoskeleton-associated protein 5 isoform X1

    3. XM_046918377.1 → XP_046774333.1  cytoskeleton-associated protein 5 isoform X2

    4. XM_046918378.1 → XP_046774334.1  cytoskeleton-associated protein 5 isoform X3

      UniProtKB/TrEMBL
      A0A3Q2U985

    5. XM_046918379.1 → XP_046774335.1  cytoskeleton-associated protein 5 isoform X4

    6. XM_046918380.1 → XP_046774336.1  cytoskeleton-associated protein 5 isoform X5

      UniProtKB/TrEMBL
      A0A8V0ZKF2

    7. XM_046918381.1 → XP_046774337.1  cytoskeleton-associated protein 5 isoform X6

    8. XM_046918375.1 → XP_046774331.1  cytoskeleton-associated protein 5 isoform X1

    9. XM_046918376.1 → XP_046774332.1  cytoskeleton-associated protein 5 isoform X1

    10. XM_046918374.1 → XP_046774330.1  cytoskeleton-associated protein 5 isoform X1

    11. XM_046918372.1 → XP_046774328.1  cytoskeleton-associated protein 5 isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version

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