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    RER1 retention in endoplasmic reticulum sorting receptor 1 [ Gallus gallus (chicken) ]

    Gene ID: 419397, updated on 3-Dec-2024

    Summary

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    Symbol
    RER1provided by CGNC
    Full Name
    retention in endoplasmic reticulum sorting receptor 1provided by CGNC
    Primary source
    CGNC:14680
    See related
    Ensembl:ENSGALG00010020027
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See RER1 in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 21 NC_052552.1 (1551176..1558407, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 21 NC_052593.1 (1582618..1589855, complement)

    Chromosome 21 - NC_052552.1Genomic Context describing neighboring genes Neighboring gene kainate binding protein Neighboring gene phospholipase C eta 2 Neighboring gene uncharacterized LOC107054921 Neighboring gene peroxisomal biogenesis factor 10 Neighboring gene uncharacterized LOC121107373 Neighboring gene SKI proto-oncogene Neighboring gene microRNA 1635

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in protein retention in ER lumen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein RER1
    Names
    RER1 retention in endoplasmic reticulum 1 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001006300.2 → NP_001006300.1  protein RER1

      See identical proteins and their annotated locations for NP_001006300.1

      Status: PROVISIONAL

      Source sequence(s)
      JAENSK010000329
      UniProtKB/Swiss-Prot
      Q5ZHM5
      UniProtKB/TrEMBL
      A0A8V0Z5K5
      Related
      ENSGALP00010028529.1, ENSGALT00010048385.1
      Conserved Domains (1) summary
      pfam03248
      Location:20 → 185
      Rer1; Rer1 family

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052552.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      1551176..1558407 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015296855.4 → XP_015152341.1  protein RER1 isoform X1

      UniProtKB/Swiss-Prot
      Q5ZHM5
      UniProtKB/TrEMBL
      A0A8V0Z5K5
      Related
      ENSGALP00010028523.1, ENSGALT00010048377.1
      Conserved Domains (1) summary
      pfam03248
      Location:20 → 185
      Rer1; Rer1 family

    2. XM_040651131.2 → XP_040507065.1  protein RER1 isoform X1

      UniProtKB/Swiss-Prot
      Q5ZHM5
      UniProtKB/TrEMBL
      A0A8V0Z5K5
      Conserved Domains (1) summary
      pfam03248
      Location:20 → 185
      Rer1; Rer1 family

    3. XM_046903113.1 → XP_046759069.1  protein RER1 isoform X1

      UniProtKB/Swiss-Prot
      Q5ZHM5
      UniProtKB/TrEMBL
      A0A8V0Z5K5

    4. XM_046903112.1 → XP_046759068.1  protein RER1 isoform X1

      UniProtKB/Swiss-Prot
      Q5ZHM5
      UniProtKB/TrEMBL
      A0A8V0Z5K5

    5. XM_040651130.2 → XP_040507064.1  protein RER1 isoform X1

      UniProtKB/Swiss-Prot
      Q5ZHM5
      UniProtKB/TrEMBL
      A0A8V0Z5K5
      Conserved Domains (1) summary
      pfam03248
      Location:20 → 185
      Rer1; Rer1 family

    6. XM_046903111.1 → XP_046759067.1  protein RER1 isoform X1

      UniProtKB/Swiss-Prot
      Q5ZHM5
      UniProtKB/TrEMBL
      A0A8V0Z5K5

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052593.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      1582618..1589855 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046931208.1 → XP_046787164.1  protein RER1 isoform X1

      UniProtKB/Swiss-Prot
      Q5ZHM5
      UniProtKB/TrEMBL
      A0A8V0Z5K5

    2. XM_046931209.1 → XP_046787165.1  protein RER1 isoform X1

      UniProtKB/Swiss-Prot
      Q5ZHM5
      UniProtKB/TrEMBL
      A0A8V0Z5K5

    3. XM_046931212.1 → XP_046787168.1  protein RER1 isoform X1

      UniProtKB/Swiss-Prot
      Q5ZHM5
      UniProtKB/TrEMBL
      A0A8V0Z5K5

    4. XM_046931211.1 → XP_046787167.1  protein RER1 isoform X1

      UniProtKB/Swiss-Prot
      Q5ZHM5
      UniProtKB/TrEMBL
      A0A8V0Z5K5

    5. XM_046931213.1 → XP_046787169.1  protein RER1 isoform X1

      UniProtKB/Swiss-Prot
      Q5ZHM5
      UniProtKB/TrEMBL
      A0A8V0Z5K5

    6. XM_046931210.1 → XP_046787166.1  protein RER1 isoform X1

      UniProtKB/Swiss-Prot
      Q5ZHM5
      UniProtKB/TrEMBL
      A0A8V0Z5K5
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5ZHM5.1 GenPept UniProtKB/Swiss-Prot:Q5ZHM5

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials