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    LRBA LPS responsive beige-like anchor protein [ Gallus gallus (chicken) ]

    Gene ID: 422476, updated on 17-Aug-2024

    Summary

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    Symbol
    LRBAprovided by CGNC
    Full Name
    LPS responsive beige-like anchor proteinprovided by CGNC
    Primary source
    CGNC:7650
    See related
    Ensembl:ENSGALG00010006883
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See LRBA in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    60
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (32422078..32794945, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (32374736..32747666, complement)

    Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene IQ motif containing M Neighboring gene doublecortin like kinase 2 Neighboring gene mab-21 like 2 Neighboring gene uncharacterized LOC121110555 Neighboring gene small nucleolar RNA SNORD73 Neighboring gene SH3 domain containing 19 Neighboring gene ribosomal protein S3A Neighboring gene FHF complex subunit HOOK interacting protein 1A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein kinase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein localization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lipopolysaccharide-responsive and beige-like anchor protein
    Names
    LPS-responsive vesicle trafficking, beach and anchor containing

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      32422078..32794945 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040699152.2 → XP_040555086.1  lipopolysaccharide-responsive and beige-like anchor protein isoform X2

      UniProtKB/TrEMBL
      A0A8V0XRJ7
      Conserved Domains (5) summary
      smart01026
      Location:2187 → 2464
      Beach; Beige/BEACH domain
      cd01201
      Location:2052 → 2155
      PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
      sd00039
      Location:2580 → 2616
      7WD40; WD40 repeat [structural motif]
      pfam09507
      Location:1005 → 1161
      CDC27; DNA polymerase subunit Cdc27
      cl29593
      Location:2585 → 2834
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    2. XM_040699153.2 → XP_040555087.1  lipopolysaccharide-responsive and beige-like anchor protein isoform X3

      UniProtKB/TrEMBL
      A0A8V0XRJ7
      Related
      ENSGALP00010009320.1, ENSGALT00010016370.1
      Conserved Domains (5) summary
      smart01026
      Location:2189 → 2466
      Beach; Beige/BEACH domain
      cd01201
      Location:2054 → 2157
      PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
      sd00039
      Location:2577 → 2613
      7WD40; WD40 repeat [structural motif]
      pfam09507
      Location:1005 → 1161
      CDC27; DNA polymerase subunit Cdc27
      cl29593
      Location:2582 → 2831
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    3. XM_015276673.4 → XP_015132159.2  lipopolysaccharide-responsive and beige-like anchor protein isoform X1

      UniProtKB/TrEMBL
      A0A8V0XRJ7
      Related
      ENSGALP00010009319.1, ENSGALT00010016355.1
      Conserved Domains (5) summary
      smart01026
      Location:2189 → 2466
      Beach; Beige/BEACH domain
      cd01201
      Location:2054 → 2157
      PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
      sd00039
      Location:2582 → 2618
      7WD40; WD40 repeat [structural motif]
      pfam09507
      Location:1005 → 1161
      CDC27; DNA polymerase subunit Cdc27
      cl29593
      Location:2587 → 2836
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    4. XM_040699154.2 → XP_040555088.1  lipopolysaccharide-responsive and beige-like anchor protein isoform X4

      Conserved Domains (4) summary
      smart01026
      Location:208 → 485
      Beach; Beige/BEACH domain
      cd01201
      Location:73 → 176
      PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
      sd00039
      Location:601 → 637
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:606 → 855
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    5. XM_046941240.1 → XP_046797196.1  lipopolysaccharide-responsive and beige-like anchor protein isoform X5

    6. XM_025150233.3 → XP_025006001.1  lipopolysaccharide-responsive and beige-like anchor protein isoform X5

      Conserved Domains (4) summary
      sd00039
      Location:449 → 485
      7WD40; WD40 repeat [structural motif]
      pfam02138
      Location:57 → 333
      Beach; Beige/BEACH domain
      cl17171
      Location:1 → 25
      PH-like; Pleckstrin homology-like domain
      cl29593
      Location:454 → 703
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    7. XM_046941239.1 → XP_046797195.1  lipopolysaccharide-responsive and beige-like anchor protein isoform X5

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      32374736..32747666 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040669592.2 → XP_040525526.1  lipopolysaccharide-responsive and beige-like anchor protein isoform X2

      UniProtKB/TrEMBL
      A0A8V0XRJ7
      Conserved Domains (5) summary
      smart01026
      Location:2187 → 2464
      Beach; Beige/BEACH domain
      cd01201
      Location:2052 → 2155
      PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
      sd00039
      Location:2580 → 2616
      7WD40; WD40 repeat [structural motif]
      pfam09507
      Location:1005 → 1161
      CDC27; DNA polymerase subunit Cdc27
      cl29593
      Location:2585 → 2834
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    2. XM_040669593.2 → XP_040525527.1  lipopolysaccharide-responsive and beige-like anchor protein isoform X3

      UniProtKB/TrEMBL
      A0A8V0XRJ7
      Conserved Domains (5) summary
      smart01026
      Location:2189 → 2466
      Beach; Beige/BEACH domain
      cd01201
      Location:2054 → 2157
      PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
      sd00039
      Location:2577 → 2613
      7WD40; WD40 repeat [structural motif]
      pfam09507
      Location:1005 → 1161
      CDC27; DNA polymerase subunit Cdc27
      cl29593
      Location:2582 → 2831
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    3. XM_040669591.2 → XP_040525525.1  lipopolysaccharide-responsive and beige-like anchor protein isoform X1

      UniProtKB/TrEMBL
      A0A8V0XRJ7
      Conserved Domains (5) summary
      smart01026
      Location:2189 → 2466
      Beach; Beige/BEACH domain
      cd01201
      Location:2054 → 2157
      PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
      sd00039
      Location:2582 → 2618
      7WD40; WD40 repeat [structural motif]
      pfam09507
      Location:1005 → 1161
      CDC27; DNA polymerase subunit Cdc27
      cl29593
      Location:2587 → 2836
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    4. XM_040669594.2 → XP_040525528.1  lipopolysaccharide-responsive and beige-like anchor protein isoform X4

      Conserved Domains (4) summary
      smart01026
      Location:208 → 485
      Beach; Beige/BEACH domain
      cd01201
      Location:73 → 176
      PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
      sd00039
      Location:601 → 637
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:606 → 855
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    5. XM_046917435.1 → XP_046773391.1  lipopolysaccharide-responsive and beige-like anchor protein isoform X5

    6. XM_040669595.2 → XP_040525529.1  lipopolysaccharide-responsive and beige-like anchor protein isoform X5

      Conserved Domains (4) summary
      sd00039
      Location:449 → 485
      7WD40; WD40 repeat [structural motif]
      pfam02138
      Location:57 → 333
      Beach; Beige/BEACH domain
      cl17171
      Location:1 → 25
      PH-like; Pleckstrin homology-like domain
      cl29593
      Location:454 → 703
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    7. XM_046917434.1 → XP_046773390.1  lipopolysaccharide-responsive and beige-like anchor protein isoform X5

    Nucleotide Protein Strain
    Heading Accession and Version

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