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    BMS1 BMS1, ribosome biogenesis factor [ Gallus gallus (chicken) ]

    Gene ID: 423633, updated on 17-Aug-2024

    Summary

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    Symbol
    BMS1provided by CGNC
    Full Name
    BMS1, ribosome biogenesis factorprovided by CGNC
    Primary source
    CGNC:1889
    See related
    Ensembl:ENSGALG00010011146
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    BMS1L
    Orthologs
    human mouse all
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    Genomic context

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    See BMS1 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 6 NC_052537.1 (5745069..5765949, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 6 NC_052578.1 (5631267..5652154, complement)

    Chromosome 6 - NC_052537.1Genomic Context describing neighboring genes Neighboring gene chondroitin sulfate N-acetylgalactosaminyltransferase 2 Neighboring gene ret proto-oncogene Neighboring gene uncharacterized LOC121111190 Neighboring gene paired box protein 6 homolog Neighboring gene transmembrane protein 254

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. EST analysis of mRNAs expressed during embryogenesis in Gallus gallus. Jorge EC, et al. Int J Dev Biol, 2004 Jun. PMID 15300514
    2. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables U3 snoRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ribosome biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of 90S preribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ribosome biogenesis protein BMS1 homolog
    Names
    BMS1 homolog, ribosome assembly protein
    BMS1-like, ribosome assembly protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001397011.1 → NP_001383940.1  ribosome biogenesis protein BMS1 homolog

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) has the short twelfth intron.
      Source sequence(s)
      BU318489, BU328417, BU359599, BU400371, BU425199, CD761459, JAENSK010000227
      Conserved Domains (1) summary
      COG5192
      Location:1 → 1296
      BMS1; GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

    2. NM_001397012.1 → NP_001383941.1  ribosome biogenesis protein BMS1 homolog

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) has the long twelfth intron.
      Source sequence(s)
      JAENSK010000227
      UniProtKB/TrEMBL
      A0A8V0YGR9
      Related
      ENSGALP00010015203.1, ENSGALT00010026652.1
      Conserved Domains (1) summary
      COG5192
      Location:1 → 1295
      BMS1; GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052537.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      5745069..5765949 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052578.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      5631267..5652154 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001199520.1: Suppressed sequence

      Description
      NM_001199520.1: This RefSeq was removed because currently there is insufficient support for the transcript, which contains some nonconsensus splice junctions.

    2. NM_001364904.1: Suppressed sequence

      Description
      NM_001364904.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein Strain
    Heading Accession and Version

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