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    DDEFL1 development and differentiation enhancing factor-like 1 [ Gallus gallus (chicken) ]

    Gene ID: 769389, updated on 17-Aug-2024

    Summary

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    Symbol
    DDEFL1provided by CGNC
    Full Name
    development and differentiation enhancing factor-like 1provided by CGNC
    Primary source
    CGNC:1195
    See related
    Ensembl:ENSGALG00010021843
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
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    Genomic context

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    See DDEFL1 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 20 NC_052551.1 (1468949..1491128)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 20 NC_052592.1 (1118857..1141068)

    Chromosome 20 - NC_052551.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121107324 Neighboring gene copine 1 Neighboring gene RNA binding motif protein 12 Neighboring gene fer-1 like family member 4, pseudogene Neighboring gene ST3 beta-galactoside alpha-2,3-sialyltransferase 8 Neighboring gene ERGIC and golgi 3 Neighboring gene centrosomal protein 250

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTPase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052551.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      1468949..1491128
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003642454.6 → XP_003642502.3  arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZMW4, A0A8V0ZTA4
      Related
      ENSGALP00010032035.1, ENSGALT00010053170.1

    2. XM_015296256.4 → XP_015151742.2  arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0ZTA4
      Conserved Domains (6) summary
      cd11821
      Location:881 → 933
      SH3_ASAP; Src homology 3 domain of ArfGAP with SH3 domain, ankyrin repeat and PH domain containing proteins
      COG0666
      Location:496 → 672
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      cd13251
      Location:296 → 402
      PH_ASAP; ArfGAP with SH3 domain, ankyrin repeat and PH domain Pleckstrin homology (PH) domain
      sd00045
      Location:578 → 610
      ANK; ANK repeat [structural motif]
      cd08834
      Location:417 → 534
      ArfGap_ASAP; ArfGAP domain of ASAP (Arf GAP, SH3, ANK repeat and PH domains) subfamily of ADP-ribosylation factor GTPase-activating proteins
      cl12013
      Location:34 → 248
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

    3. XM_040650878.2 → XP_040506812.1  arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8V0ZTA4
      Conserved Domains (6) summary
      cd11821
      Location:710 → 762
      SH3_ASAP; Src homology 3 domain of ArfGAP with SH3 domain, ankyrin repeat and PH domain containing proteins
      COG0666
      Location:324 → 501
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      cd13251
      Location:124 → 230
      PH_ASAP; ArfGAP with SH3 domain, ankyrin repeat and PH domain Pleckstrin homology (PH) domain
      sd00045
      Location:406 → 439
      ANK; ANK repeat [structural motif]
      cd08834
      Location:245 → 362
      ArfGap_ASAP; ArfGAP domain of ASAP (Arf GAP, SH3, ANK repeat and PH domains) subfamily of ADP-ribosylation factor GTPase-activating proteins
      cl12013
      Location:1 → 76
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

    RNA

    1. XR_003071373.3 RNA Sequence

      Related
      ENSGALT00010053162.1

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052592.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      1118857..1141068
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040688384.2 → XP_040544318.1  arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZTA4
      Conserved Domains (6) summary
      cd11821
      Location:882 → 934
      SH3_ASAP; Src homology 3 domain of ArfGAP with SH3 domain, ankyrin repeat and PH domain containing proteins
      COG0666
      Location:496 → 673
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      cd13251
      Location:296 → 402
      PH_ASAP; ArfGAP with SH3 domain, ankyrin repeat and PH domain Pleckstrin homology (PH) domain
      sd00045
      Location:578 → 611
      ANK; ANK repeat [structural motif]
      cd08834
      Location:417 → 534
      ArfGap_ASAP; ArfGAP domain of ASAP (Arf GAP, SH3, ANK repeat and PH domains) subfamily of ADP-ribosylation factor GTPase-activating proteins
      cl12013
      Location:34 → 248
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

    2. XM_040688385.2 → XP_040544319.1  arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0ZTA4
      Conserved Domains (6) summary
      cd11821
      Location:881 → 933
      SH3_ASAP; Src homology 3 domain of ArfGAP with SH3 domain, ankyrin repeat and PH domain containing proteins
      cd13251
      Location:296 → 402
      PH_ASAP; ArfGAP with SH3 domain, ankyrin repeat and PH domain Pleckstrin homology (PH) domain
      sd00045
      Location:578 → 610
      ANK; ANK repeat [structural motif]
      cd08834
      Location:417 → 534
      ArfGap_ASAP; ArfGAP domain of ASAP (Arf GAP, SH3, ANK repeat and PH domains) subfamily of ADP-ribosylation factor GTPase-activating proteins
      pfam12796
      Location:566 → 643
      Ank_2; Ankyrin repeats (3 copies)
      cl12013
      Location:34 → 248
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

    3. XM_040688387.2 → XP_040544321.1  arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8V0ZTA4
      Conserved Domains (6) summary
      cd11821
      Location:710 → 762
      SH3_ASAP; Src homology 3 domain of ArfGAP with SH3 domain, ankyrin repeat and PH domain containing proteins
      COG0666
      Location:324 → 501
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      cd13251
      Location:124 → 230
      PH_ASAP; ArfGAP with SH3 domain, ankyrin repeat and PH domain Pleckstrin homology (PH) domain
      sd00045
      Location:406 → 439
      ANK; ANK repeat [structural motif]
      cd08834
      Location:245 → 362
      ArfGap_ASAP; ArfGAP domain of ASAP (Arf GAP, SH3, ANK repeat and PH domains) subfamily of ADP-ribosylation factor GTPase-activating proteins
      cl12013
      Location:1 → 76
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

    RNA

    1. XR_005855436.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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