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    REXO5 RNA exonuclease 5 [ Gallus gallus (chicken) ]

    Gene ID: 427001, updated on 3-Dec-2024

    Summary

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    Official Symbol
    REXO5provided by CGNC
    Official Full Name
    RNA exonuclease 5provided by CGNC
    Primary source
    CGNC:52961
    See related
    Ensembl:ENSGALG00010017993
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    EXNEF
    Orthologs
    human mouse all
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    Genomic context

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    See REXO5 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 14 NC_052545.1 (15012859..15027489)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 14 NC_052586.1 (14603592..14618236, complement)

    Chromosome 14 - NC_052545.1Genomic Context describing neighboring genes Neighboring gene THUMP domain containing 1 Neighboring gene acyl-CoA synthetase medium-chain family member 3 Neighboring gene ERI1 exoribonuclease family member 2 Neighboring gene defective in cullin neddylation 1 domain containing 3 Neighboring gene LYR motif containing 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables exonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA exonuclease 5
    Names
    exonuclease NEF-sp

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001006573.2 → NP_001006573.2  RNA exonuclease 5

      Status: PROVISIONAL

      Source sequence(s)
      JAENSK010000258
      UniProtKB/TrEMBL
      A0A8V0Z4K9, F1P5D1, Q5ZMH0
      Related
      ENSGALP00010025854.1, ENSGALT00010043485.1
      Conserved Domains (2) summary
      cd06145
      Location:223 → 371
      REX1_like; DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins
      TIGR01645
      Location:504 → 675
      half-pint; poly-U binding splicing factor, half-pint family

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052545.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      15012859..15027489
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025155117.3 → XP_025010885.2  RNA exonuclease 5 isoform X1

      UniProtKB/TrEMBL
      F1P5D1, Q5ZMH0
      Conserved Domains (2) summary
      cd06145
      Location:125 → 273
      REX1_like; DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins
      TIGR01645
      Location:406 → 577
      half-pint; poly-U binding splicing factor, half-pint family

    2. XM_015294804.3 → XP_015150290.2  RNA exonuclease 5 isoform X2

      UniProtKB/TrEMBL
      F1P5D1, Q5ZMH0
      Conserved Domains (2) summary
      cd06145
      Location:95 → 243
      REX1_like; DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins
      TIGR01645
      Location:376 → 547
      half-pint; poly-U binding splicing factor, half-pint family

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052586.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      14603592..14618236 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046927509.1 → XP_046783465.1  RNA exonuclease 5 isoform X1

      UniProtKB/TrEMBL
      F1P5D1, Q5ZMH0

    2. XM_046927510.1 → XP_046783466.1  RNA exonuclease 5 isoform X2

      UniProtKB/TrEMBL
      F1P5D1, Q5ZMH0
    Nucleotide Protein Strain
    Heading Accession and Version

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