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    DENND4C DENN domain containing 4C [ Gallus gallus (chicken) ]

    Gene ID: 427236, updated on 3-Dec-2024

    Summary

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    Symbol
    DENND4Cprovided by CGNC
    Full Name
    DENN domain containing 4Cprovided by CGNC
    Primary source
    CGNC:11222
    See related
    Ensembl:ENSGALG00010016305
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See DENND4C in Genome Data Viewer
    Location:
    chromosome: Z
    Exon count:
    39
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) Z NC_052572.1 (34103472..34186709)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) Z NC_059536.1 (34103472..34186709)

    Chromosome Z - NC_052572.1Genomic Context describing neighboring genes Neighboring gene perilipin 2 Neighboring gene uncharacterized LOC124417554 Neighboring gene ribosomal protein S6 Neighboring gene alkaline ceramidase 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of Rab protein signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasmic vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DENN domain-containing protein 4C
    Names
    DENN/MADD domain containing 4C

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052572.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      34103472..34186709
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046905887.1 → XP_046761843.1  DENN domain-containing protein 4C isoform X2

      UniProtKB/TrEMBL
      A0A8V0YX50

    2. XM_046905885.1 → XP_046761841.1  DENN domain-containing protein 4C isoform X2

      UniProtKB/TrEMBL
      A0A8V0YX50

    3. XM_040656252.2 → XP_040512186.1  DENN domain-containing protein 4C isoform X2

      UniProtKB/TrEMBL
      A0A8V0YX50
      Conserved Domains (5) summary
      smart00801
      Location:558 → 631
      dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
      smart00800
      Location:192 → 274
      uDENN; Domain always found upstream of DENN domain, found in a variety of signalling proteins
      sd00004
      Location:819 → 848
      PPR; PPR repeat [structural motif]
      pfam02141
      Location:308 → 491
      DENN; DENN (AEX-3) domain
      pfam13041
      Location:818 → 857
      PPR_2; PPR repeat family

    4. XM_025144804.3 → XP_025000572.1  DENN domain-containing protein 4C isoform X2

      UniProtKB/TrEMBL
      A0A8V0YX50
      Conserved Domains (5) summary
      smart00801
      Location:558 → 631
      dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
      smart00800
      Location:192 → 274
      uDENN; Domain always found upstream of DENN domain, found in a variety of signalling proteins
      sd00004
      Location:819 → 848
      PPR; PPR repeat [structural motif]
      pfam02141
      Location:308 → 491
      DENN; DENN (AEX-3) domain
      pfam13041
      Location:818 → 857
      PPR_2; PPR repeat family

    5. XM_046905884.1 → XP_046761840.1  DENN domain-containing protein 4C isoform X1

      UniProtKB/TrEMBL
      A0A8V0YX50

    6. XM_025144802.3 → XP_025000570.3  DENN domain-containing protein 4C isoform X1

      UniProtKB/TrEMBL
      A0A8V0YX50

    7. XM_046905889.1 → XP_046761845.1  DENN domain-containing protein 4C isoform X3

      UniProtKB/TrEMBL
      A0A8V0YNP7

    8. XM_046905886.1 → XP_046761842.1  DENN domain-containing protein 4C isoform X2

      UniProtKB/TrEMBL
      A0A8V0YX50

    9. XM_004949126.5 → XP_004949183.1  DENN domain-containing protein 4C isoform X2

      See identical proteins and their annotated locations for XP_004949183.1

      UniProtKB/TrEMBL
      A0A8V0YX50
      Related
      ENSGALP00010022631.1, ENSGALT00010039206.1
      Conserved Domains (5) summary
      smart00801
      Location:558 → 631
      dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
      smart00800
      Location:192 → 274
      uDENN; Domain always found upstream of DENN domain, found in a variety of signalling proteins
      sd00004
      Location:819 → 848
      PPR; PPR repeat [structural motif]
      pfam02141
      Location:308 → 491
      DENN; DENN (AEX-3) domain
      pfam13041
      Location:818 → 857
      PPR_2; PPR repeat family

    10. XM_046905890.1 → XP_046761846.1  DENN domain-containing protein 4C isoform X2

      UniProtKB/TrEMBL
      A0A8V0YX50

    11. XM_046905888.1 → XP_046761844.1  DENN domain-containing protein 4C isoform X2

      UniProtKB/TrEMBL
      A0A8V0YX50

    12. XM_040656250.2 → XP_040512184.1  DENN domain-containing protein 4C isoform X2

      UniProtKB/TrEMBL
      A0A8V0YX50
      Conserved Domains (5) summary
      smart00801
      Location:558 → 631
      dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
      smart00800
      Location:192 → 274
      uDENN; Domain always found upstream of DENN domain, found in a variety of signalling proteins
      sd00004
      Location:819 → 848
      PPR; PPR repeat [structural motif]
      pfam02141
      Location:308 → 491
      DENN; DENN (AEX-3) domain
      pfam13041
      Location:818 → 857
      PPR_2; PPR repeat family

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_059536.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      34103472..34186709
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046936662.1 → XP_046792618.1  DENN domain-containing protein 4C isoform X2

      UniProtKB/TrEMBL
      A0A8V0YX50

    2. XM_046936660.1 → XP_046792616.1  DENN domain-containing protein 4C isoform X2

      UniProtKB/TrEMBL
      A0A8V0YX50

    3. XM_046936659.1 → XP_046792615.1  DENN domain-containing protein 4C isoform X2

      UniProtKB/TrEMBL
      A0A8V0YX50

    4. XM_046936658.1 → XP_046792614.1  DENN domain-containing protein 4C isoform X2

      UniProtKB/TrEMBL
      A0A8V0YX50

    5. XM_046936654.1 → XP_046792610.1  DENN domain-containing protein 4C isoform X1

      UniProtKB/TrEMBL
      A0A8V0YX50

    6. XM_046936655.1 → XP_046792611.1  DENN domain-containing protein 4C isoform X1

      UniProtKB/TrEMBL
      A0A8V0YX50

    7. XM_046936664.1 → XP_046792620.1  DENN domain-containing protein 4C isoform X3

      UniProtKB/TrEMBL
      A0A8V0YNP7

    8. XM_046936661.1 → XP_046792617.1  DENN domain-containing protein 4C isoform X2

      UniProtKB/TrEMBL
      A0A8V0YX50

    9. XM_046936657.1 → XP_046792613.1  DENN domain-containing protein 4C isoform X2

      UniProtKB/TrEMBL
      A0A8V0YX50

    10. XM_046936665.1 → XP_046792621.1  DENN domain-containing protein 4C isoform X2

      UniProtKB/TrEMBL
      A0A8V0YX50

    11. XM_046936663.1 → XP_046792619.1  DENN domain-containing protein 4C isoform X2

      UniProtKB/TrEMBL
      A0A8V0YX50

    12. XM_046936656.1 → XP_046792612.1  DENN domain-containing protein 4C isoform X2

      UniProtKB/TrEMBL
      A0A8V0YX50
    Nucleotide Protein Strain
    Heading Accession and Version

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