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    ABCB5 ATP binding cassette subfamily B member 5 [ Gallus gallus (chicken) ]

    Gene ID: 420606, updated on 3-Dec-2024

    Summary

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    Symbol
    ABCB5provided by CGNC
    Full Name
    ATP binding cassette subfamily B member 5provided by CGNC
    Primary source
    CGNC:51299
    See related
    Ensembl:ENSGALG00010003061
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    XXbac-BPG246D15.9
    Orthologs
    human mouse all
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    Genomic context

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    See ABCB5 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (29974278..30012159)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (29986870..30043725)

    Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene MACC1, MET transcriptional regulator Neighboring gene uncharacterized LOC121109727 Neighboring gene integrin subunit beta 8 Neighboring gene uncharacterized LOC776051 Neighboring gene Sp8 transcription factor Neighboring gene uncharacterized LOC124417737

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Developing microsatellite markers from cDNA: a tool for adding expressed sequence tags to the genetic linkage map of the chicken. Ruyter-Spira CP, et al. Anim Genet, 1998 Apr. PMID 9699267
    2. Development and mapping of polymorphic microsatellite markers derived from a chicken brain cDNA library. Ruyter-Spira CP, et al. Anim Genet, 1996 Aug. PMID 8856919
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ABC-type transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP-binding cassette sub-family B member 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      29974278..30012159
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015281858.4 → XP_015137344.1  ATP-binding cassette sub-family B member 5 isoform X1

      UniProtKB/TrEMBL
      A0A8V0X873, F1NTA4
      Related
      ENSGALP00010004307.1, ENSGALT00010007139.1
      Conserved Domains (1) summary
      cl28181
      Location:73 → 1315
      AAA; ATPases associated with a variety of cellular activities

    2. XM_040695442.2 → XP_040551376.1  ATP-binding cassette sub-family B member 5 isoform X2

      Conserved Domains (4) summary
      cd03249
      Location:417 → 654
      ABC_MTABC3_MDL1_MDL2; ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins
      COG1132
      Location:136 → 656
      MdlB; ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]
      cd07346
      Location:756 → 779
      ABC_6TM_exporters; TM helix 1 [structural motif]
      cl38913
      Location:746 → 875
      ABC_6TM_exporters; Six-transmembrane helical domain of the ATP-binding cassette transporters

    3. XM_418707.8 → XP_418707.5  ATP-binding cassette sub-family B member 5 isoform X1

      UniProtKB/TrEMBL
      A0A8V0X873, F1NTA4
      Related
      ENSGALP00010004310.1, ENSGALT00010007146.1
      Conserved Domains (1) summary
      cl28181
      Location:73 → 1315
      AAA; ATPases associated with a variety of cellular activities

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      29986870..30043725
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046912285.1 → XP_046768241.1  ATP-binding cassette sub-family B member 5 isoform X3

      UniProtKB/TrEMBL
      A0A8V0X873

    2. XM_040664356.2 → XP_040520290.1  ATP-binding cassette sub-family B member 5 isoform X3

      UniProtKB/TrEMBL
      A0A8V0X873
      Conserved Domains (1) summary
      PTZ00265
      Location:84 → 1323
      PTZ00265; multidrug resistance protein (mdr1); Provisional

    3. XM_040664358.2 → XP_040520292.1  ATP-binding cassette sub-family B member 5 isoform X4

      Conserved Domains (4) summary
      cd03249
      Location:428 → 665
      ABC_MTABC3_MDL1_MDL2; ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins
      COG1132
      Location:147 → 667
      MdlB; ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]
      cd07346
      Location:767 → 790
      ABC_6TM_exporters; TM helix 1 [structural motif]
      cl38913
      Location:757 → 886
      ABC_6TM_exporters; Six-transmembrane helical domain of the ATP-binding cassette transporters

    4. XM_040664357.2 → XP_040520291.1  ATP-binding cassette sub-family B member 5 isoform X1

      UniProtKB/TrEMBL
      A0A8V0X873
      Conserved Domains (1) summary
      PTZ00265
      Location:73 → 1312
      PTZ00265; multidrug resistance protein (mdr1); Provisional

    5. XM_046912286.1 → XP_046768242.1  ATP-binding cassette sub-family B member 5 isoform X1

      UniProtKB/TrEMBL
      A0A8V0X873
    Nucleotide Protein Strain
    Heading Accession and Version

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