U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    CWC15 CWC15 spliceosome associated protein homolog [ Gallus gallus (chicken) ]

    Gene ID: 418996, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Symbol
    CWC15provided by CGNC
    Full Name
    CWC15 spliceosome associated protein homologprovided by CGNC
    Primary source
    CGNC:12929
    See related
    Ensembl:ENSGALG00010008409
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CWC15 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (185344874..185365578)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (185394006..185414741)

    Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene sestrin 3 Neighboring gene endonuclease domain containing 1 Neighboring gene angiomotin like 1 Neighboring gene fucosyltransferase 4

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A large database of chicken bursal ESTs as a resource for the analysis of vertebrate gene function. Abdrakhmanov I, et al. Genome Res, 2000 Dec. PMID 11116100, Free PMC Article
    2. Development of a chicken 5 K microarray targeted towards immune function. Smith J, et al. BMC Genomics, 2006 Mar 13. PMID 16533398, Free PMC Article
    3. ESTs from brain and testis of White Leghorn and red junglefowl: annotation, bioinformatic classification of unknown transcripts and analysis of expression levels. Savolainen P, et al. Cytogenet Genome Res, 2005. PMID 16093725
    4. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA cis splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    spliceosome-associated protein CWC15 homolog
    Names
    CWC15 homolog

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001277823.2 → NP_001264752.1  spliceosome-associated protein CWC15 homolog

      See identical proteins and their annotated locations for NP_001264752.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 both encode the same protein.
      Source sequence(s)
      JAENSK010000027
      UniProtKB/TrEMBL
      E1C8V6
      Conserved Domains (1) summary
      pfam04889
      Location:1 → 229
      Cwf_Cwc_15; Cwf15/Cwc15 cell cycle control protein

    2. NM_001277824.2 → NP_001264753.1  spliceosome-associated protein CWC15 homolog

      See identical proteins and their annotated locations for NP_001264753.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 both encode the same protein.
      Source sequence(s)
      JAENSK010000027
      UniProtKB/TrEMBL
      E1C8V6
      Related
      ENSGALP00010011665.1, ENSGALT00010020117.1
      Conserved Domains (1) summary
      pfam04889
      Location:1 → 229
      Cwf_Cwc_15; Cwf15/Cwc15 cell cycle control protein

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      185344874..185365578
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046942102.1 → XP_046798058.1  spliceosome-associated protein CWC15 homolog isoform X1

      UniProtKB/TrEMBL
      E1C8V6

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      185394006..185414741
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046908351.1 → XP_046764307.1  spliceosome-associated protein CWC15 homolog isoform X1

      UniProtKB/TrEMBL
      E1C8V6
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.