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    CABIN1 calcineurin binding protein 1 [ Gallus gallus (chicken) ]

    Gene ID: 416938, updated on 17-Aug-2024

    Summary

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    Symbol
    CABIN1provided by CGNC
    Full Name
    calcineurin binding protein 1provided by CGNC
    Primary source
    CGNC:50388
    See related
    Ensembl:ENSGALG00010026167
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See CABIN1 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    38
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 15 NC_052546.1 (8130762..8224993)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 15 NC_052587.1 (8141461..8235651)

    Chromosome 15 - NC_052546.1Genomic Context describing neighboring genes Neighboring gene glutathione S-transferase theta 1 Neighboring gene D-dopachrome tautomerase-like Neighboring gene MGA, MAX dimerization protein Neighboring gene CRK like proto-oncogene, adaptor protein Neighboring gene kelch like family member 22

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleosome binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calcineurin-binding protein cabin-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052546.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      8130762..8224993
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004934335.5 → XP_004934392.2  calcineurin-binding protein cabin-1 isoform X1

      UniProtKB/TrEMBL
      A0A8V1ACV9
      Related
      ENSGALP00010039321.1, ENSGALT00010063730.1
      Conserved Domains (3) summary
      COG0457
      Location:36 → 212
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:92 → 120
      TPR; TPR repeat [structural motif]
      pfam09047
      Location:2116 → 2150
      MEF2_binding; MEF2 binding

    2. XM_015275465.4 → XP_015130951.2  calcineurin-binding protein cabin-1 isoform X3

      UniProtKB/TrEMBL
      A0A8V1A7W9
      Related
      ENSGALP00010039324.1, ENSGALT00010063736.1
      Conserved Domains (3) summary
      COG0457
      Location:36 → 212
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:92 → 120
      TPR; TPR repeat [structural motif]
      pfam09047
      Location:2061 → 2095
      MEF2_binding; MEF2 binding

    3. XM_004934336.5 → XP_004934393.2  calcineurin-binding protein cabin-1 isoform X2

      Conserved Domains (3) summary
      COG0457
      Location:36 → 212
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:92 → 120
      TPR; TPR repeat [structural motif]
      pfam09047
      Location:2087 → 2121
      MEF2_binding; MEF2 binding

    4. XM_015275462.4 → XP_015130948.2  calcineurin-binding protein cabin-1 isoform X4

      Conserved Domains (3) summary
      COG0457
      Location:36 → 212
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:92 → 120
      TPR; TPR repeat [structural motif]
      pfam09047
      Location:2113 → 2147
      MEF2_binding; MEF2 binding

    5. XM_015275464.4 → XP_015130950.2  calcineurin-binding protein cabin-1 isoform X5

      Conserved Domains (3) summary
      COG0457
      Location:36 → 212
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:92 → 120
      TPR; TPR repeat [structural motif]
      pfam09047
      Location:2084 → 2118
      MEF2_binding; MEF2 binding

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052587.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      8141461..8235651
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040684793.2 → XP_040540727.1  calcineurin-binding protein cabin-1 isoform X1

      Conserved Domains (3) summary
      COG0457
      Location:36 → 212
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:92 → 120
      TPR; TPR repeat [structural motif]
      pfam09047
      Location:2116 → 2150
      MEF2_binding; MEF2 binding

    2. XM_040684798.2 → XP_040540732.1  calcineurin-binding protein cabin-1 isoform X3

      Conserved Domains (3) summary
      COG0457
      Location:36 → 212
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:92 → 120
      TPR; TPR repeat [structural motif]
      pfam09047
      Location:2061 → 2095
      MEF2_binding; MEF2 binding

    3. XM_040684796.2 → XP_040540730.1  calcineurin-binding protein cabin-1 isoform X2

      Conserved Domains (3) summary
      COG0457
      Location:36 → 212
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:92 → 120
      TPR; TPR repeat [structural motif]
      pfam09047
      Location:2087 → 2121
      MEF2_binding; MEF2 binding

    4. XM_040684795.2 → XP_040540729.1  calcineurin-binding protein cabin-1 isoform X4

      Conserved Domains (3) summary
      COG0457
      Location:36 → 212
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:92 → 120
      TPR; TPR repeat [structural motif]
      pfam09047
      Location:2113 → 2147
      MEF2_binding; MEF2 binding

    5. XM_040684797.2 → XP_040540731.1  calcineurin-binding protein cabin-1 isoform X5

      Conserved Domains (3) summary
      COG0457
      Location:36 → 212
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:92 → 120
      TPR; TPR repeat [structural motif]
      pfam09047
      Location:2084 → 2118
      MEF2_binding; MEF2 binding
    Nucleotide Protein Strain
    Heading Accession and Version

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