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    AP4B1 adaptor related protein complex 4 beta 1 subunit [ Gallus gallus (chicken) ]

    Gene ID: 419879, updated on 3-Dec-2024

    Summary

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    Symbol
    AP4B1provided by CGNC
    Full Name
    adaptor related protein complex 4 beta 1 subunitprovided by CGNC
    Primary source
    CGNC:14666
    See related
    Ensembl:ENSGALG00010027402
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See AP4B1 in Genome Data Viewer
    Location:
    chromosome: 26
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 26 NC_052557.1 (3804694..3811343, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 26 NC_052598.1 (3772711..3779654, complement)

    Chromosome 26 - NC_052557.1Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase, non-receptor type 22 Neighboring gene BCL2 like 15 Neighboring gene DNA cross-link repair 1B Neighboring gene translation initiation factor IF-2-like Neighboring gene homeodomain interacting protein kinase 1 Neighboring gene olfactomedin like 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables clathrin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of clathrin adaptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of membrane coat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AP-4 complex subunit beta-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001389349.2 → NP_001376278.2  AP-4 complex subunit beta-1

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000356
      UniProtKB/TrEMBL
      A0A8V1A497, A0A8V1A958
      Related
      ENSGALP00010040710.1, ENSGALT00010066444.1
      Conserved Domains (3) summary
      smart01020
      Location:621 → 733
      B2-adapt-app_C; Beta2-adaptin appendage, C-terminal sub-domain
      PTZ00429
      Location:28 → 533
      PTZ00429; beta-adaptin; Provisional
      sd00044
      Location:86 → 113
      HEAT; HEAT repeat [structural motif]

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052557.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      3804694..3811343 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025143694.3 → XP_024999462.2  AP-4 complex subunit beta-1 isoform X2

      UniProtKB/TrEMBL
      A0A8V1A497
      Conserved Domains (3) summary
      smart01020
      Location:644 → 756
      B2-adapt-app_C; Beta2-adaptin appendage, C-terminal sub-domain
      PTZ00429
      Location:52 → 556
      PTZ00429; beta-adaptin; Provisional
      sd00044
      Location:109 → 136
      HEAT; HEAT repeat [structural motif]

    2. XM_025143696.3 → XP_024999464.2  AP-4 complex subunit beta-1 isoform X1

      UniProtKB/TrEMBL
      A0A8V1A492, Q5ZJB3
      Related
      ENSGALP00010040703.1, ENSGALT00010066437.1
      Conserved Domains (2) summary
      smart01020
      Location:415 → 527
      B2-adapt-app_C; Beta2-adaptin appendage, C-terminal sub-domain
      PTZ00429
      Location:6 → 327
      PTZ00429; beta-adaptin; Provisional

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052598.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      3772711..3779654 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046932951.1 → XP_046788907.1  AP-4 complex subunit beta-1 isoform X3

    2. XM_046932952.1 → XP_046788908.1  AP-4 complex subunit beta-1 isoform X1

      UniProtKB/TrEMBL
      Q5ZJB3

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001030917.1: Suppressed sequence

      Description
      NM_001030917.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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