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    BAP1 BRCA1 associated protein 1 [ Gallus gallus (chicken) ]

    Gene ID: 415944, updated on 3-Dec-2024

    Summary

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    Symbol
    BAP1provided by CGNC
    Full Name
    BRCA1 associated protein 1provided by CGNC
    Primary source
    CGNC:3215
    See related
    Ensembl:ENSGALG00010027501
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See BAP1 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 12 NC_052543.1 (3288986..3301714, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 12 NC_052584.1 (3338310..3351039, complement)

    Chromosome 12 - NC_052543.1Genomic Context describing neighboring genes Neighboring gene serine/arginine repetitive matrix protein 2-like Neighboring gene uncharacterized LOC121106645 Neighboring gene dynein axonemal heavy chain 1 Neighboring gene HAUS augmin-like complex subunit 3-like Neighboring gene semaphorin 3G Neighboring gene aminoacylase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin carboxyl-terminal hydrolase BAP1
    Names
    BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase)
    NP_001025761.2
    XP_040502131.1
    XP_040502132.1
    XP_040502133.1
    XP_040502135.1
    XP_040502136.1
    XP_040502137.1
    XP_040502138.1
    XP_046782196.1
    XP_046782197.1
    XP_046782198.1
    XP_046782199.1
    XP_046782200.1
    XP_046782201.1
    XP_046782202.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001030590.3 → NP_001025761.2  ubiquitin carboxyl-terminal hydrolase BAP1

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000252
      UniProtKB/Swiss-Prot
      Q5F3N6
      UniProtKB/TrEMBL
      A0A1D5P867
      Related
      ENSGALP00010040796.1, ENSGALT00010066627.1
      Conserved Domains (2) summary
      cd09617
      Location:5 → 233
      Peptidase_C12_UCH37_BAP1; Cysteine peptidase C12 containing ubiquitin carboxyl-terminal hydrolase (UCH) families UCH37 (UCH-L5) and BAP1
      pfam18031
      Location:614 → 659
      UCH_C; Ubiquitin carboxyl-terminal hydrolases

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052543.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      3288986..3301714 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040646204.2 → XP_040502138.1  ubiquitin carboxyl-terminal hydrolase BAP1 isoform X7

      UniProtKB/Swiss-Prot
      Q5F3N6
      Conserved Domains (1) summary
      cd09617
      Location:5 → 233
      Peptidase_C12_UCH37_BAP1; Cysteine peptidase C12 containing ubiquitin carboxyl-terminal hydrolase (UCH) families UCH37 (UCH-L5) and BAP1

    2. XM_040646203.2 → XP_040502137.1  ubiquitin carboxyl-terminal hydrolase BAP1 isoform X6

      UniProtKB/Swiss-Prot
      Q5F3N6
      Conserved Domains (1) summary
      cd09617
      Location:5 → 233
      Peptidase_C12_UCH37_BAP1; Cysteine peptidase C12 containing ubiquitin carboxyl-terminal hydrolase (UCH) families UCH37 (UCH-L5) and BAP1

    3. XM_040646199.2 → XP_040502133.1  ubiquitin carboxyl-terminal hydrolase BAP1 isoform X3

      UniProtKB/Swiss-Prot
      Q5F3N6
      Conserved Domains (1) summary
      cd09617
      Location:5 → 233
      Peptidase_C12_UCH37_BAP1; Cysteine peptidase C12 containing ubiquitin carboxyl-terminal hydrolase (UCH) families UCH37 (UCH-L5) and BAP1

    4. XM_040646202.2 → XP_040502136.1  ubiquitin carboxyl-terminal hydrolase BAP1 isoform X5

      UniProtKB/Swiss-Prot
      Q5F3N6
      Conserved Domains (1) summary
      cd09617
      Location:5 → 266
      Peptidase_C12_UCH37_BAP1; Cysteine peptidase C12 containing ubiquitin carboxyl-terminal hydrolase (UCH) families UCH37 (UCH-L5) and BAP1

    5. XM_040646201.2 → XP_040502135.1  ubiquitin carboxyl-terminal hydrolase BAP1 isoform X4

      UniProtKB/Swiss-Prot
      Q5F3N6
      Conserved Domains (1) summary
      cd09617
      Location:5 → 266
      Peptidase_C12_UCH37_BAP1; Cysteine peptidase C12 containing ubiquitin carboxyl-terminal hydrolase (UCH) families UCH37 (UCH-L5) and BAP1

    6. XM_040646198.2 → XP_040502132.1  ubiquitin carboxyl-terminal hydrolase BAP1 isoform X2

      UniProtKB/Swiss-Prot
      Q5F3N6
      Conserved Domains (1) summary
      cd09617
      Location:5 → 266
      Peptidase_C12_UCH37_BAP1; Cysteine peptidase C12 containing ubiquitin carboxyl-terminal hydrolase (UCH) families UCH37 (UCH-L5) and BAP1

    7. XM_040646197.2 → XP_040502131.1  ubiquitin carboxyl-terminal hydrolase BAP1 isoform X1

      UniProtKB/Swiss-Prot
      Q5F3N6
      Conserved Domains (1) summary
      cd09617
      Location:5 → 266
      Peptidase_C12_UCH37_BAP1; Cysteine peptidase C12 containing ubiquitin carboxyl-terminal hydrolase (UCH) families UCH37 (UCH-L5) and BAP1

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052584.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      3338310..3351039 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046926246.1 → XP_046782202.1  ubiquitin carboxyl-terminal hydrolase BAP1 isoform X7

      UniProtKB/Swiss-Prot
      Q5F3N6

    2. XM_046926245.1 → XP_046782201.1  ubiquitin carboxyl-terminal hydrolase BAP1 isoform X6

      UniProtKB/Swiss-Prot
      Q5F3N6

    3. XM_046926242.1 → XP_046782198.1  ubiquitin carboxyl-terminal hydrolase BAP1 isoform X3

      UniProtKB/Swiss-Prot
      Q5F3N6

    4. XM_046926244.1 → XP_046782200.1  ubiquitin carboxyl-terminal hydrolase BAP1 isoform X5

      UniProtKB/Swiss-Prot
      Q5F3N6

    5. XM_046926243.1 → XP_046782199.1  ubiquitin carboxyl-terminal hydrolase BAP1 isoform X4

      UniProtKB/Swiss-Prot
      Q5F3N6

    6. XM_046926241.1 → XP_046782197.1  ubiquitin carboxyl-terminal hydrolase BAP1 isoform X2

      UniProtKB/Swiss-Prot
      Q5F3N6

    7. XM_046926240.1 → XP_046782196.1  ubiquitin carboxyl-terminal hydrolase BAP1 isoform X1

      UniProtKB/Swiss-Prot
      Q5F3N6
    Nucleotide Protein Strain
    Heading Accession and Version

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