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    SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 [ Gallus gallus (chicken) ]

    Gene ID: 420047, updated on 3-Dec-2024

    Summary

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    Symbol
    SMARCE1provided by CGNC
    Full Name
    SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1provided by CGNC
    Primary source
    CGNC:51164
    See related
    Ensembl:ENSGALG00010022547
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See SMARCE1 in Genome Data Viewer
    Location:
    chromosome: 27
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 27 NC_052558.1 (4482630..4497180, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 27 NC_052599.1 (5644789..5659347, complement)

    Chromosome 27 - NC_052558.1Genomic Context describing neighboring genes Neighboring gene tensin 4 Neighboring gene uncharacterized LOC107055315 Neighboring gene C-C motif chemokine receptor 7 Neighboring gene uncharacterized LOC107055316 Neighboring gene keratin 222 Neighboring gene keratin, type I cytoskeletal 12-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. EST analysis of mRNAs expressed during embryogenesis in Gallus gallus. Jorge EC, et al. Int J Dev Biol, 2004 Jun. PMID 15300514
    2. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nuclear receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleosomal DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SWI/SNF complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001006335.3 → NP_001006335.2  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1

      See identical proteins and their annotated locations for NP_001006335.2

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000365
      UniProtKB/TrEMBL
      Q5ZLP0
      Related
      ENSGALP00010033172.1, ENSGALT00010054874.1
      Conserved Domains (3) summary
      PTZ00121
      Location:145 → 411
      PTZ00121; MAEBL; Provisional
      PHA03169
      Location:291 → 412
      PHA03169; hypothetical protein; Provisional
      cd01390
      Location:70 → 131
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052558.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      4482630..4497180 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046904353.1 → XP_046760309.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X4

      UniProtKB/TrEMBL
      Q5ZLP0

    2. XM_040653169.2 → XP_040509103.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X2

      UniProtKB/TrEMBL
      A0A1L1RRC3, Q5ZLP0
      Related
      ENSGALP00010033177.1, ENSGALT00010054879.1
      Conserved Domains (3) summary
      PTZ00121
      Location:110 → 376
      PTZ00121; MAEBL; Provisional
      PHA03169
      Location:256 → 377
      PHA03169; hypothetical protein; Provisional
      cd01390
      Location:35 → 96
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...

    3. XM_040653171.2 → XP_040509105.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X3

      UniProtKB/TrEMBL
      Q5ZLP0
      Conserved Domains (2) summary
      PTZ00121
      Location:101 → 367
      PTZ00121; MAEBL; Provisional
      PHA03169
      Location:247 → 368
      PHA03169; hypothetical protein; Provisional

    4. XM_015299606.4 → XP_015155092.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X1

      UniProtKB/TrEMBL
      Q5ZLP0
      Conserved Domains (3) summary
      PTZ00121
      Location:145 → 411
      PTZ00121; MAEBL; Provisional
      PHA03169
      Location:291 → 412
      PHA03169; hypothetical protein; Provisional
      cd01390
      Location:70 → 131
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052599.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      5644789..5659347 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046933370.1 → XP_046789326.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X4

      UniProtKB/TrEMBL
      Q5ZLP0

    2. XM_046933368.1 → XP_046789324.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X2

      UniProtKB/TrEMBL
      A0A1L1RRC3, Q5ZLP0

    3. XM_046933369.1 → XP_046789325.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X3

      UniProtKB/TrEMBL
      Q5ZLP0

    4. XM_046933367.1 → XP_046789323.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X1

      UniProtKB/TrEMBL
      Q5ZLP0
    Nucleotide Protein Strain
    Heading Accession and Version

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