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    VPS16 VPS16 core subunit of CORVET and HOPS complexes [ Gallus gallus (chicken) ]

    Gene ID: 426571, updated on 3-Dec-2024

    Summary

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    Official Symbol
    VPS16provided by CGNC
    Official Full Name
    VPS16 core subunit of CORVET and HOPS complexesprovided by CGNC
    Primary source
    CGNC:10774
    See related
    Ensembl:ENSGALG00010005978
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See VPS16 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (90501950..90511079)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (90219999..90229138)

    Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene carboxypeptidase X, M14 family member 1 Neighboring gene probable N-acetyltransferase camello Neighboring gene N-acetyltransferase 8 (GCN5-related, putative) Neighboring gene N-acetyltransferase 8B (putative, gene/pseudogene) Neighboring gene isocitrate dehydrogenase 3 (NAD(+)) beta Neighboring gene small nucleolar RNA SNORD57 Neighboring gene NOP56 ribonucleoprotein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Chicken genomics resource: sequencing and annotation of 35,407 ESTs from single and multiple tissue cDNA libraries and CAP3 assembly of a chicken gene index. Carre W, et al. Physiol Genomics, 2006 May 16. PMID 16554550
    2. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endosomal transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vacuole fusion, non-autophagic IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of HOPS complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in lysosomal membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vacuolar protein sorting-associated protein 16 homolog
    Names
    VPS16, CORVET/HOPS core subunit
    vacuolar protein sorting 16 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001271150.2 → NP_001258079.1  vacuolar protein sorting-associated protein 16 homolog

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000081
      UniProtKB/TrEMBL
      A0A8V0XR33
      Related
      ENSGALP00010008395.1, ENSGALT00010014299.1
      Conserved Domains (2) summary
      pfam04841
      Location:4 → 420
      Vps16_N; Vps16, N-terminal region
      pfam04840
      Location:517 → 834
      Vps16_C; Vps16, C-terminal region

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      90501950..90511079
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040699091.2 → XP_040555025.1  vacuolar protein sorting-associated protein 16 homolog isoform X1

      UniProtKB/TrEMBL
      A0A3Q2U2L2, A0A8V0XR33
      Related
      ENSGALP00010008398.1, ENSGALT00010014304.1
      Conserved Domains (2) summary
      pfam04841
      Location:4 → 379
      Vps16_N; Vps16, N-terminal region
      pfam04840
      Location:476 → 793
      Vps16_C; Vps16, C-terminal region

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      90219999..90229138
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046916492.1 → XP_046772448.1  vacuolar protein sorting-associated protein 16 homolog isoform X1

      UniProtKB/TrEMBL
      A0A3Q2U2L2, A0A8V0XR33
    Nucleotide Protein Strain
    Heading Accession and Version

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