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    SRP72 signal recognition particle 72 [ Gallus gallus (chicken) ]

    Gene ID: 422626, updated on 17-Aug-2024

    Summary

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    Symbol
    SRP72provided by CGNC
    Full Name
    signal recognition particle 72provided by CGNC
    Primary source
    CGNC:8666
    See related
    Ensembl:ENSGALG00010003737
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See SRP72 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (48748632..48763242)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (48753930..48768541)

    Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene store-operated calcium entry associated regulatory factor Neighboring gene leptin receptor overlapping transcript like 1 Neighboring gene uncharacterized LOC107051727 Neighboring gene ADP ribosylation factor like GTPase 9 Neighboring gene uncharacterized LOC121110672 Neighboring gene HOP homeobox Neighboring gene serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 7S RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ribosome binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in SRP-dependent cotranslational protein targeting to membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of signal recognition particle, endoplasmic reticulum targeting IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    signal recognition particle subunit SRP72
    Names
    signal recognition particle 72 kDa protein
    signal recognition particle 72kDa

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001006449.2 → NP_001006449.1  signal recognition particle subunit SRP72

      See identical proteins and their annotated locations for NP_001006449.1

      Status: PROVISIONAL

      Source sequence(s)
      JAENSK010000074
      UniProtKB/TrEMBL
      A0A8V0XLE4, E1BVX9, Q5ZKZ5
      Related
      ENSGALP00010005057.1, ENSGALT00010008637.1
      Conserved Domains (4) summary
      sd00006
      Location:184 → 212
      TPR; TPR repeat [structural motif]
      pfam08492
      Location:532 → 585
      SRP72; SRP72 RNA-binding domain
      pfam17004
      Location:37 → 158
      SRP_TPR_like; Putative TPR-like repeat
      cl26002
      Location:26 → 481
      TPR_11; TPR repeat

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      48748632..48763242
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      48753930..48768541
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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